1k3f: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1k3f.png|left|200px]]


<!--
==Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice==
The line below this paragraph, containing "STRUCTURE_1k3f", creates the "Structure Box" on the page.
<StructureSection load='1k3f' size='340' side='right'caption='[[1k3f]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1k3f]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K3F FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k3f OCA], [https://pdbe.org/1k3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k3f RCSB], [https://www.ebi.ac.uk/pdbsum/1k3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k3f ProSAT]</span></td></tr>
{{STRUCTURE_1k3f| PDB=1k3f |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/UDP_ECOLI UDP_ECOLI] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/1k3f_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k3f ConSurf].
<div style="clear:both"></div>


===Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice===
==See Also==
 
*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_7796917}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 7796917 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_7796917}}
 
==About this Structure==
1K3F is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K3F OCA].
 
==Reference==
<ref group="xtra">PMID:7796917</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Uridine phosphorylase]]
[[Category: Large Structures]]
[[Category: Armstrong, S R.]]
[[Category: Armstrong SR]]
[[Category: Blagova, E V.]]
[[Category: Blagova EV]]
[[Category: Burlakova, A A.]]
[[Category: Burlakova AA]]
[[Category: Debabov, V G.]]
[[Category: Debabov VG]]
[[Category: Ealick, S E.]]
[[Category: Ealick SE]]
[[Category: Komissarov, A A.]]
[[Category: Komissarov AA]]
[[Category: Linkova, E V.]]
[[Category: Linkova EV]]
[[Category: Mao, C.]]
[[Category: Mao C]]
[[Category: Mikhailov, A M.]]
[[Category: Mikhailov AM]]
[[Category: Mironov, A S.]]
[[Category: Mironov AS]]
[[Category: Morgunova, E Yu.]]
[[Category: Morgunova EYu]]
[[Category: Popov, A N.]]
[[Category: Popov AN]]
[[Category: Smirnova, E A.]]
[[Category: Smirnova EA]]
[[Category: Vainshtein, B K.]]
[[Category: Vainshtein BK]]
[[Category: Hexamer]]
[[Category: Nucleoside phosphorylase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:59:43 2009''
Retrieved from "https://proteopedia.org/1k3f"