2d8a: Difference between revisions

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New page: left|200px<br /><applet load="2d8a" size="450" color="white" frame="true" align="right" spinBox="true" caption="2d8a, resolution 2.05Å" /> '''Crystal Structure of...
 
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[[Image:2d8a.gif|left|200px]]<br /><applet load="2d8a" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2d8a, resolution 2.05&Aring;" />
'''Crystal Structure of PH0655 from Pyrococcus horikoshii OT3'''<br />


==About this Structure==
==Crystal Structure of PH0655 from Pyrococcus horikoshii OT3==
2D8A is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with ZN and NAD as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/L-threonine_3-dehydrogenase L-threonine 3-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.103 1.1.1.103] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2D8A OCA].
<StructureSection load='2d8a' size='340' side='right'caption='[[2d8a]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
[[Category: L-threonine 3-dehydrogenase]]
== Structural highlights ==
[[Category: Pyrococcus horikoshii]]
<table><tr><td colspan='2'>[[2d8a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D8A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D8A FirstGlance]. <br>
[[Category: Single protein]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
[[Category: Asada, Y.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Kunishima, N.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d8a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d8a OCA], [https://pdbe.org/2d8a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d8a RCSB], [https://www.ebi.ac.uk/pdbsum/2d8a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d8a ProSAT], [https://www.topsan.org/Proteins/RSGI/2d8a TOPSAN]</span></td></tr>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
</table>
[[Category: NAD]]
== Function ==
[[Category: ZN]]
[https://www.uniprot.org/uniprot/TDH_PYRHO TDH_PYRHO]  
[[Category: national project on protein structural and functional analyses]]
== Evolutionary Conservation ==
[[Category: nppsfa]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: ph0655]]
Check<jmol>
[[Category: pyrococcus horikoshii ot3]]
  <jmolCheckbox>
[[Category: riken structural genomics/proteomics initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/2d8a_consurf.spt"</scriptWhenChecked>
[[Category: rsgi]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: structural genomics]]
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:28:57 2007''
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d8a ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Asada Y]]
[[Category: Kunishima N]]
Retrieved from "https://proteopedia.org/2d8a"