2dq4: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
New page: left|200px<br /><applet load="2dq4" size="450" color="white" frame="true" align="right" spinBox="true" caption="2dq4, resolution 2.50Å" /> '''Crystal structure of...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(16 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2dq4.jpg|left|200px]]<br /><applet load="2dq4" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2dq4, resolution 2.50&Aring;" />
'''Crystal structure of threonine 3-dehydrogenase'''<br />


==About this Structure==
==Crystal structure of threonine 3-dehydrogenase==
2DQ4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with ZN and MES as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/L-threonine_3-dehydrogenase L-threonine 3-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.103 1.1.1.103] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2DQ4 OCA].  
<StructureSection load='2dq4' size='340' side='right'caption='[[2dq4]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
[[Category: L-threonine 3-dehydrogenase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2dq4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DQ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DQ4 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dq4 OCA], [https://pdbe.org/2dq4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dq4 RCSB], [https://www.ebi.ac.uk/pdbsum/2dq4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dq4 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dq4 TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/TDH_THET8 TDH_THET8]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/2dq4_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dq4 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Goto, M.]]
[[Category: Goto M]]
[[Category: Hirotsu, K.]]
[[Category: Hirotsu K]]
[[Category: Miyahara, I.]]
[[Category: Miyahara I]]
[[Category: Omi, R.]]
[[Category: Omi R]]
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
[[Category: Yao T]]
[[Category: Yao, T.]]
[[Category: MES]]
[[Category: ZN]]
[[Category: nad-dependent]]
[[Category: national project on protein structural and functional analyses]]
[[Category: nppsfa]]
[[Category: oxidoreductase]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomics]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 09:43:25 2007''
Retrieved from "https://proteopedia.org/2dq4"