1t70: Difference between revisions

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{{Seed}}
[[Image:1t70.png|left|200px]]


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==Crystal structure of a novel phosphatase from Deinococcus radiodurans==
The line below this paragraph, containing "STRUCTURE_1t70", creates the "Structure Box" on the page.
<StructureSection load='1t70' size='340' side='right'caption='[[1t70]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1t70]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T70 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T70 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t70 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t70 OCA], [https://pdbe.org/1t70 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t70 RCSB], [https://www.ebi.ac.uk/pdbsum/1t70 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t70 ProSAT], [https://www.topsan.org/Proteins/BSGC/1t70 TOPSAN]</span></td></tr>
{{STRUCTURE_1t70|  PDB=1t70  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of a novel phosphatase from Deinococcus radiodurans===
[https://www.uniprot.org/uniprot/PPDE_DEIRA PPDE_DEIRA] Has a dual activity phosphatase/phosphodiesterase in vitro, with a preference to phosphoenolpyruvate (PEP) and 2',3'-cAMP, respectively. Can also use 2',3'-cGMP, 2',3'-cCMP and various model substrates such as p-nitrophenyl phosphate (pNPP), bis-p-nitrophenyl phosphate (bis-pNPP) and p-nitrophenyl thymidine monophosphate (pNP-TMP).<ref>PMID:17847097</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_17847097}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 17847097 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t7/1t70_consurf.spt"</scriptWhenChecked>
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    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_17847097}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t70 ConSurf].
1T70 is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans_r1 Deinococcus radiodurans r1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T70 OCA].  
<div style="clear:both"></div>
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:17847097</ref><references group="xtra"/>
__TOC__
[[Category: Deinococcus radiodurans r1]]
</StructureSection>
[[Category: BSGC, Berkeley Structural Genomics Center.]]
[[Category: Deinococcus radiodurans R1]]
[[Category: Kim, R.]]
[[Category: Large Structures]]
[[Category: Kim, S H.]]
[[Category: Kim R]]
[[Category: Shin, D H.]]
[[Category: Kim SH]]
[[Category: Wang, W.]]
[[Category: Shin DH]]
[[Category: Yokota, H.]]
[[Category: Wang W]]
[[Category: Berkeley structural genomics center]]
[[Category: Yokota H]]
[[Category: Bsgc]]
[[Category: Crystal]]
[[Category: Hydrolase]]
[[Category: Phosphatase]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: X-ray crystallography]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 14:47:12 2009''

Latest revision as of 08:36, 14 February 2024

Crystal structure of a novel phosphatase from Deinococcus radiodurans

1t70, resolution 2.30Å

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