2qgh: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2qgh.png|left|200px]]


<!--
==Crystal structure of diaminopimelate decarboxylase from Helicobacter pylori complexed with L-lysine==
The line below this paragraph, containing "STRUCTURE_2qgh", creates the "Structure Box" on the page.
<StructureSection load='2qgh' size='340' side='right'caption='[[2qgh]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2qgh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_SS1 Helicobacter pylori SS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QGH FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
{{STRUCTURE_2qgh|  PDB=2qgh  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qgh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qgh OCA], [https://pdbe.org/2qgh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qgh RCSB], [https://www.ebi.ac.uk/pdbsum/2qgh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qgh ProSAT]</span></td></tr>
 
</table>
===Crystal structure of diaminopimelate decarboxylase from Helicobacter pylori complexed with L-lysine===
== Function ==
 
[https://www.uniprot.org/uniprot/DCDA_HELPX DCDA_HELPX]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2QGH is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGH OCA].  
Check<jmol>
[[Category: Diaminopimelate decarboxylase]]
  <jmolCheckbox>
[[Category: Helicobacter pylori]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/2qgh_consurf.spt"</scriptWhenChecked>
[[Category: Hu, T.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Jiang, H.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Shen, X.]]
  </jmolCheckbox>
[[Category: Wu, D.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qgh ConSurf].
[[Category: Diaminopimelate decarboxylase]]
<div style="clear:both"></div>
[[Category: Lyase]]
__TOC__
 
</StructureSection>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:57:49 2009''
[[Category: Helicobacter pylori SS1]]
[[Category: Large Structures]]
[[Category: Hu T]]
[[Category: Jiang H]]
[[Category: Shen X]]
[[Category: Wu D]]
Retrieved from "https://proteopedia.org/2qgh"