1dkz: Difference between revisions

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{{Seed}}
[[Image:1dkz.png|left|200px]]


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==THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS==
The line below this paragraph, containing "STRUCTURE_1dkz", creates the "Structure Box" on the page.
<StructureSection load='1dkz' size='340' side='right'caption='[[1dkz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1dkz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. The August 2002 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Chaperones''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2002_8 10.2210/rcsb_pdb/mom_2002_8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DKZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DKZ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dkz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dkz OCA], [https://pdbe.org/1dkz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dkz RCSB], [https://www.ebi.ac.uk/pdbsum/1dkz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dkz ProSAT]</span></td></tr>
{{STRUCTURE_1dkz| PDB=1dkz |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/DNAK_ECOLI DNAK_ECOLI] Plays an essential role in the initiation of phage lambda DNA replication, where it acts in an ATP-dependent fashion with the DnaJ protein to release lambda O and P proteins from the preprimosomal complex. DnaK is also involved in chromosomal DNA replication, possibly through an analogous interaction with the DnaA protein. Also participates actively in the response to hyperosmotic shock.[HAMAP-Rule:MF_00332]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/1dkz_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dkz ConSurf].
<div style="clear:both"></div>


===THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS===
==See Also==
 
*[[Heat Shock Protein structures|Heat Shock Protein structures]]
 
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_8658133}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 8658133 is the PubMed ID number.
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{{ABSTRACT_PUBMED_8658133}}
 
==About this Structure==
1DKZ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. The August 2002 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Chaperones''  by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2002_8 10.2210/rcsb_pdb/mom_2002_8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DKZ OCA].
 
==Reference==
<ref group="xtra">PMID:8658133</ref><references group="xtra"/>
[[Category: Chaperones]]
[[Category: Chaperones]]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Burkholder, W F.]]
[[Category: Large Structures]]
[[Category: Gottesman, M E.]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: Gragerov, A.]]
[[Category: Burkholder WF]]
[[Category: Hendrickson, W A.]]
[[Category: Gottesman ME]]
[[Category: Ogata, C M.]]
[[Category: Gragerov A]]
[[Category: Zhao, X.]]
[[Category: Hendrickson WA]]
[[Category: Zhu, X.]]
[[Category: Ogata CM]]
[[Category: Dnak]]
[[Category: Zhao X]]
 
[[Category: Zhu X]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:47:59 2009''
Retrieved from "https://proteopedia.org/1dkz"