1p9k: Difference between revisions

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{{Seed}}
[[Image:1p9k.png|left|200px]]


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==THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING==
The line below this paragraph, containing "STRUCTURE_1p9k", creates the "Structure Box" on the page.
<StructureSection load='1p9k' size='340' side='right'caption='[[1p9k]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1p9k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1o09 1o09]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P9K FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p9k OCA], [https://pdbe.org/1p9k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p9k RCSB], [https://www.ebi.ac.uk/pdbsum/1p9k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p9k ProSAT], [https://www.topsan.org/Proteins/BSGI/1p9k TOPSAN]</span></td></tr>
{{STRUCTURE_1p9k|  PDB=1p9k  |  SCENE=  }}
</table>
 
== Function ==
===THE SOLUTION STRUCTURE OF YBCJ FROM E. COLI REVEALS A RECENTLY DISCOVERED ALFAL MOTIF INVOLVED IN RNA-BINDING===
[https://www.uniprot.org/uniprot/YBCJ_ECOLI YBCJ_ECOLI] Its structure and the presence of conserved basic residues indicates that it probably binds RNA.
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_12837795}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 12837795 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/1p9k_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_12837795}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p9k ConSurf].
1P9K is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1o09 1o09]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P9K OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:12837795</ref><references group="xtra"/>
[[Category: Escherichia coli K-12]]
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
[[Category: Cygler M]]
[[Category: Cygler, M.]]
[[Category: Ekiel I]]
[[Category: Ekiel, I.]]
[[Category: Gandhi S]]
[[Category: Gandhi, S.]]
[[Category: Gehring K]]
[[Category: Gehring, K.]]
[[Category: Iannuzzi P]]
[[Category: Iannuzzi, P.]]
[[Category: Larocque R]]
[[Category: Larocque, R.]]
[[Category: Lievre C]]
[[Category: Lievre, C.]]
[[Category: Matte A]]
[[Category: Matte, A.]]
[[Category: Osborne MJ]]
[[Category: Osborne, M J.]]
[[Category: Volpon L]]
[[Category: Volpon, L.]]
[[Category: Alfal motif]]
[[Category: Bsgi]]
[[Category: E coli]]
[[Category: Montreal-kingston bacterial structural genomics initiative]]
[[Category: Rna-binding protein]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:32:46 2009''
Retrieved from "https://proteopedia.org/1p9k"