1yux: Difference between revisions

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{{Seed}}
[[Image:1yux.png|left|200px]]


<!--
==Mixed valant state of nigerythrin==
The line below this paragraph, containing "STRUCTURE_1yux", creates the "Structure Box" on the page.
<StructureSection load='1yux' size='340' side='right'caption='[[1yux]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1yux]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YUX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
{{STRUCTURE_1yux|  PDB=1yux  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yux OCA], [https://pdbe.org/1yux PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yux RCSB], [https://www.ebi.ac.uk/pdbsum/1yux PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yux ProSAT]</span></td></tr>
 
</table>
===Mixed valant state of nigerythrin===
== Function ==
 
[https://www.uniprot.org/uniprot/NIGY_DESVH NIGY_DESVH] Exhibits NADH peroxidase activity (in vitro).
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_15895271}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 15895271 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yu/1yux_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15895271}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1YUX is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUX OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yux ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:15895271</ref><references group="xtra"/>
</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
[[Category: Iyer, R B.]]
[[Category: Large Structures]]
[[Category: Kurtz, D M.]]
[[Category: Iyer RB]]
[[Category: Lanzilotta, W N.]]
[[Category: Kurtz DM]]
[[Category: Silaghi-Dumitrescu, R.]]
[[Category: Lanzilotta WN]]
[[Category: Diiron]]
[[Category: Silaghi-Dumitrescu R]]
[[Category: Electron transfer]]
[[Category: Hemerythrin]]
[[Category: Peroxidase]]
[[Category: Rubredoxin]]
[[Category: Rubrythrin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:07:09 2009''

Latest revision as of 09:00, 14 February 2024

Mixed valant state of nigerythrin

1yux, resolution 1.60Å

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