1d8h: Difference between revisions

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{{Seed}}
[[Image:1d8h.png|left|200px]]


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==X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.==
The line below this paragraph, containing "STRUCTURE_1d8h", creates the "Structure Box" on the page.
<StructureSection load='1d8h' size='340' side='right'caption='[[1d8h]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1d8h]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D8H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D8H FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1d8h|  PDB=1d8h  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d8h OCA], [https://pdbe.org/1d8h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d8h RCSB], [https://www.ebi.ac.uk/pdbsum/1d8h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d8h ProSAT]</span></td></tr>
 
</table>
===X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.===
== Function ==
 
[https://www.uniprot.org/uniprot/CET1_YEAST CET1_YEAST] First step of mRNA capping. Converts the 5'-triphosphate end of a nascent mRNA chain into a diphosphate end.<ref>PMID:12788946</ref>  
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 10589681 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/1d8h_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_10589681}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1D8H is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D8H OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1d8h ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
<ref group="xtra">PMID:10589681</ref><references group="xtra"/>
<references/>
[[Category: Polynucleotide 5'-phosphatase]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Lima, C D.]]
[[Category: Lima CD]]
[[Category: Shuman, S.]]
[[Category: Shuman S]]
[[Category: Wang, L K.]]
[[Category: Wang LK]]
[[Category: Beta subunit]]
[[Category: Catalytic domain]]
[[Category: Dimer]]
[[Category: Manganese/sulfate complex]]
[[Category: Mrna capping]]
[[Category: Mrna processing]]
[[Category: Nuclear protein beta barrel]]
[[Category: Polynucleotide 5'-triphosphatase]]
[[Category: Rna triphosphatase]]
 
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Retrieved from "https://proteopedia.org/1d8h"