1rf4: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:1rf4.png|left|200px]]


<!--
==Structural Studies of Streptococcus pneumoniae EPSP Synthase, Tetrahedral intermediate Bound State==
The line below this paragraph, containing "STRUCTURE_1rf4", creates the "Structure Box" on the page.
<StructureSection load='1rf4' size='340' side='right'caption='[[1rf4]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1rf4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RF4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SPQ:(3R,4S,5R)-5-{[(1R)-1-CARBOXY-2-FLUORO-1-(PHOSPHONOOXY)ETHYL]OXY}-4-HYDROXY-3-(PHOSPHONOOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC+ACID'>SPQ</scene></td></tr>
{{STRUCTURE_1rf4| PDB=1rf4 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rf4 OCA], [https://pdbe.org/1rf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rf4 RCSB], [https://www.ebi.ac.uk/pdbsum/1rf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rf4 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AROA_STRPN AROA_STRPN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rf4_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rf4 ConSurf].
<div style="clear:both"></div>


===Structural Studies of Streptococcus pneumoniae EPSP Synthase, Tetrahedral intermediate Bound State===
==See Also==
 
*[[EPSP synthase 3D structures|EPSP synthase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_14763973}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 14763973 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_14763973}}
 
==About this Structure==
1RF4 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RF4 OCA].
 
==Reference==
<ref group="xtra">PMID:14763973</ref><references group="xtra"/>
[[Category: 3-phosphoshikimate 1-carboxyvinyltransferase]]
[[Category: Streptococcus pneumoniae]]
[[Category: Streptococcus pneumoniae]]
[[Category: Evans, J N.]]
[[Category: Evans JN]]
[[Category: Hilsenbeck, J L.]]
[[Category: Hilsenbeck JL]]
[[Category: Kang, C.]]
[[Category: Kang C]]
[[Category: Kim, H J.]]
[[Category: Kim HJ]]
[[Category: Park, H.]]
[[Category: Park H]]
[[Category: Park, Y H.]]
[[Category: Park YH]]
[[Category: Shuttleworth, W A.]]
[[Category: Shuttleworth WA]]
[[Category: Epsp synthase]]
[[Category: Glyphosate]]
[[Category: Pep]]
[[Category: S. pneumoniae]]
[[Category: S3p]]
[[Category: Shikimate pathway]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:55:16 2009''