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New page: left|200px<br /><applet load="2ht2" size="450" color="white" frame="true" align="right" spinBox="true" caption="2ht2, resolution 3.32Å" /> '''Structure of the Esc...
 
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[[Image:2ht2.gif|left|200px]]<br /><applet load="2ht2" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2ht2, resolution 3.32&Aring;" />
'''Structure of the Escherichia coli ClC chloride channel Y445H mutant and Fab complex'''<br />


==Overview==
==Structure of the Escherichia coli ClC chloride channel Y445H mutant and Fab complex==
The Cl-/H+ exchange-transporter CLC-ec1 mediates stoichiometric, transmembrane exchange of two Cl- ions for one proton. A conserved, tyrosine residue, Y445, coordinates one of the bound Cl- ions visible in, the structure of this protein and is located near the intersection of the, Cl- and H+ pathways. Mutants of this tyrosine were scrutinized for effects, on the coupled transport of Cl- and H+ determined electrophysiologically, and on protein structure determined crystallographically. Despite the, strong conservation of Y445 in the CLC family, substitution of F or W at, this position preserves wild-type transport behavior. Substitution by A, E, or H, however, produces uncoupled proteins with robust Cl- transport, but greatly impaired movement of H+. The obligatory 2 Cl-/1 H+, stoichiometry is thus lost in these mutants. The structures of all the, mutants are essentially identical to wild-type, but apparent anion, occupancy in the Cl- binding region correlates with functional H+, coupling. In particular, as determined by anomalous diffraction in, crystals grown in Br-, an electrophysiologically competent Cl- analogue, the well-coupled transporters show strong Br- electron density at the, "inner" and "central" Cl- binding sites. However, in the uncoupled, mutants, Br- density is absent at the central site, while still present at, the inner site. An additional mutant, Y445L, is intermediate in both, functional and structural features. This mutant clearly exchanges H+ for, Cl-, but at a reduced H+-to-Cl- ratio; likewise, both the central and, inner sites are occupied by Br-, but the central site shows lower Br-, density than in wild-type (or in Y445F,W). The correlation between proton, coupling and central-site occupancy argues that halide binding to the, central transport site somehow facilitates movement of H+, a synergism, that is not readily understood in terms of alternating-site antiport, schemes.
<StructureSection load='2ht2' size='340' side='right'caption='[[2ht2]], [[Resolution|resolution]] 3.32&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2ht2]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HT2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HT2 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.32&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ht2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ht2 OCA], [https://pdbe.org/2ht2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ht2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ht2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ht2 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CLCA_ECOLI CLCA_ECOLI] Proton-coupled chloride transporter. Functions as antiport system and exchanges two chloride ions for 1 proton. Probably acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response.<ref>PMID:12384697</ref> <ref>PMID:14985752</ref> <ref>PMID:16341087</ref> <ref>PMID:16905147</ref> <ref>PMID:18678918</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ht/2ht2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ht2 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The Cl-/H+ exchange-transporter CLC-ec1 mediates stoichiometric transmembrane exchange of two Cl- ions for one proton. A conserved tyrosine residue, Y445, coordinates one of the bound Cl- ions visible in the structure of this protein and is located near the intersection of the Cl- and H+ pathways. Mutants of this tyrosine were scrutinized for effects on the coupled transport of Cl- and H+ determined electrophysiologically and on protein structure determined crystallographically. Despite the strong conservation of Y445 in the CLC family, substitution of F or W at this position preserves wild-type transport behavior. Substitution by A, E, or H, however, produces uncoupled proteins with robust Cl- transport but greatly impaired movement of H+. The obligatory 2 Cl-/1 H+ stoichiometry is thus lost in these mutants. The structures of all the mutants are essentially identical to wild-type, but apparent anion occupancy in the Cl- binding region correlates with functional H+ coupling. In particular, as determined by anomalous diffraction in crystals grown in Br-, an electrophysiologically competent Cl- analogue, the well-coupled transporters show strong Br- electron density at the "inner" and "central" Cl- binding sites. However, in the uncoupled mutants, Br- density is absent at the central site, while still present at the inner site. An additional mutant, Y445L, is intermediate in both functional and structural features. This mutant clearly exchanges H+ for Cl-, but at a reduced H+-to-Cl- ratio; likewise, both the central and inner sites are occupied by Br-, but the central site shows lower Br- density than in wild-type (or in Y445F,W). The correlation between proton coupling and central-site occupancy argues that halide binding to the central transport site somehow facilitates movement of H+, a synergism that is not readily understood in terms of alternating-site antiport schemes.


==About this Structure==
Synergism between halide binding and proton transport in a CLC-type exchanger.,Accardi A, Lobet S, Williams C, Miller C, Dutzler R J Mol Biol. 2006 Sep 29;362(4):691-9. Epub 2006 Aug 2. PMID:16949616<ref>PMID:16949616</ref>
2HT2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with BR as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2HT2 OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Synergism between halide binding and proton transport in a CLC-type exchanger., Accardi A, Lobet S, Williams C, Miller C, Dutzler R, J Mol Biol. 2006 Sep 29;362(4):691-9. Epub 2006 Aug 2. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16949616 16949616]
</div>
<div class="pdbe-citations 2ht2" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: Single protein]]
[[Category: Accardi A]]
[[Category: Accardi, A.]]
[[Category: Dutzler R]]
[[Category: Dutzler, R.]]
[[Category: Lobet S]]
[[Category: Lobet, S.]]
[[Category: Miller C]]
[[Category: Miller, C.]]
[[Category: Williams C]]
[[Category: Williams, C.]]
[[Category: BR]]
[[Category: clc family of channel and transporters]]
[[Category: fab complex]]
[[Category: h+/cl- antiporter]]
[[Category: membrane protein]]
 
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