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| '''This sandbox is in use until June 1, 2009 for UMass Chemistry 490a. Others please do not edit this page. Thanks!'''
| | #REDIRECT[[Sandbox 3]] |
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| L Thompson 3/1/09
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| Start by finding a protein with a known structure that interests you (see assignment sheet instructions). Determine whether anyone else in the class has already started a sandbox page for your protein (not sure yet how to do this easily...). If so, join their page. If not, start a new sandbox page.
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| Copy the message at the top into your sandbox page to "reserve" this sandbox for this course (others can still edit it but there is a way to go back -- not sure how yet).
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| Give "credit" for all your entries: add your name (like mine above) and also the source of anything that you got from another source.
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| Look of the pdb id for your protein in the Protein Data Bank. Use this code to find the Proteopedia entry: this is the "automatically seeded entry". Copy this into your sandbox as a starting point.
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| I looked for the earliest GFP structure I could find in the protein data bank and found 1ema. I searched Proteopedia for 1ema, clicked "edit page" button at the top, and then copied the contents below.
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| ==This is a placeholder==
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| This is a placeholder text to help you get started in
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| placing a Jmol applet on your page. At any time, click
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| "Show Preview" at the bottom of this page to see how it goes.
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| Replace the PDB id (use lowercase!) after the STRUCTURE_ and after PDB= to load
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| and display another structure.
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| {{STRUCTURE_1ema | PDB=1ema | SCENE= }}
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