3dl8: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3dl8.png|left|200px]]


<!--
==Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA==
The line below this paragraph, containing "STRUCTURE_3dl8", creates the "Structure Box" on the page.
<StructureSection load='3dl8' size='340' side='right'caption='[[3dl8]], [[Resolution|resolution]] 7.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dl8]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus] and [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DL8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DL8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 7.5&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dl8 OCA], [https://pdbe.org/3dl8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dl8 RCSB], [https://www.ebi.ac.uk/pdbsum/3dl8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dl8 ProSAT]</span></td></tr>
{{STRUCTURE_3dl8| PDB=3dl8 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/SECA_BACSU SECA_BACSU] Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane (By similarity).[HAMAP-Rule:MF_01382]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dl8_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dl8 ConSurf].
<div style="clear:both"></div>


===Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA===
==See Also==
 
*[[Preprotein translocase 3D structures|Preprotein translocase 3D structures]]
 
*[[SecA|SecA]]
<!--
__TOC__
The line below this paragraph, {{ABSTRACT_PUBMED_18923516}}, adds the Publication Abstract to the page
</StructureSection>
(as it appears on PubMed at http://www.pubmed.gov), where 18923516 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_18923516}}
 
==About this Structure==
3DL8 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus] and [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DL8 OCA].
 
==Reference==
Structure of a complex of the ATPase SecA and the protein-translocation channel., Zimmer J, Nam Y, Rapoport TA, Nature. 2008 Oct 16;455(7215):936-43. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18923516 18923516]
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
[[Category: Nam Y]]
[[Category: Atp-binding]]
[[Category: Rapoport TA]]
[[Category: Cell membrane]]
[[Category: Zimmer J]]
[[Category: Cytoplasm]]
[[Category: Membrane]]
[[Category: Metal-binding]]
[[Category: Nucleotide-binding]]
[[Category: Protein transport]]
[[Category: Reca-type atpase membrane protein translocation protein-protein complex]]
[[Category: Translocation]]
[[Category: Transmembrane]]
[[Category: Transport]]
[[Category: Zinc]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 11 20:16:11 2009''

Latest revision as of 09:41, 21 February 2024

Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA

3dl8, resolution 7.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3dl8&oldid=4064268"