2kfp: Difference between revisions
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< | ==Solution NMR structure of PSPTO_3016 from Pseudomonas syringae. Northeast Structural Genomics Consortium target PsR293.== | ||
<StructureSection load='2kfp' size='340' side='right'caption='[[2kfp]]' scene=''> | |||
You may | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2kfp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KFP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KFP FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kfp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kfp OCA], [https://pdbe.org/2kfp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kfp RCSB], [https://www.ebi.ac.uk/pdbsum/2kfp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kfp ProSAT], [https://www.topsan.org/Proteins/NESGC/2kfp TOPSAN]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/Q880Y4_PSESM Q880Y4_PSESM] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kf/2kfp_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kfp ConSurf]. | |||
<div style="clear:both"></div> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The protein Pspto_3016 is a 117-residue member of the protein domain family PF04237 (DUF419), which is to date a functionally uncharacterized family of proteins. In this report, we describe the structure of Pspto_3016 from Pseudomonas syringae solved by both solution NMR and X-ray crystallography at 2.5 A resolution. In both cases, the structure of Pspto_3016 adopts a "double wing" alpha/beta sandwich fold similar to that of protein YjbR from Escherichia coli and to the C-terminal DNA binding domain of the MotA transcription factor (MotCF) from T4 bacteriophage, along with other uncharacterized proteins. Pspto_3016 was selected by the Protein Structure Initiative of the National Institutes of Health and the Northeast Structural Genomics Consortium (NESG ID PsR293). | |||
Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a "double wing" DNA binding motif.,Feldmann EA, Seetharaman J, Ramelot TA, Lew S, Zhao L, Hamilton K, Ciccosanti C, Xiao R, Acton TB, Everett JK, Tong L, Montelione GT, Kennedy MA J Struct Funct Genomics. 2012 Sep;13(3):155-62. Epub 2012 Aug 3. PMID:22865330<ref>PMID:22865330</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
== | </div> | ||
<div class="pdbe-citations 2kfp" style="background-color:#fffaf0;"></div> | |||
[[Category: Pseudomonas syringae]] | == References == | ||
[[Category: Acton | <references/> | ||
[[Category: Ciccosanti | __TOC__ | ||
[[Category: Everett | </StructureSection> | ||
[[Category: Feldmann | [[Category: Large Structures]] | ||
[[Category: Hamilton | [[Category: Pseudomonas syringae pv. tomato]] | ||
[[Category: Kennedy | [[Category: Acton TB]] | ||
[[Category: Montelione | [[Category: Ciccosanti C]] | ||
[[Category: Everett JK]] | |||
[[Category: Nair | [[Category: Feldmann EA]] | ||
[[Category: Ramelot | [[Category: Hamilton K]] | ||
[[Category: Rost | [[Category: Kennedy MA]] | ||
[[Category: Swapna | [[Category: Montelione GT]] | ||
[[Category: Xiao | [[Category: Nair R]] | ||
[[Category: Zhao | [[Category: Ramelot TA]] | ||
[[Category: Rost B]] | |||
[[Category: Swapna G]] | |||
[[Category: Xiao R]] | |||
[[Category: Zhao L]] | |||
Latest revision as of 09:47, 9 May 2024
Solution NMR structure of PSPTO_3016 from Pseudomonas syringae. Northeast Structural Genomics Consortium target PsR293.
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