3eeu: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3eeu.jpg|left|200px]]


<!--
==Structure of the RNA pyrophosphohydrolase BdRppH in complex with Holmium==
The line below this paragraph, containing "STRUCTURE_3eeu", creates the "Structure Box" on the page.
<StructureSection load='3eeu' size='340' side='right'caption='[[3eeu]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3eeu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EEU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EEU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HO:HOLMIUM+ATOM'>HO</scene></td></tr>
{{STRUCTURE_3eeu|  PDB=3eeu  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eeu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eeu OCA], [https://pdbe.org/3eeu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eeu RCSB], [https://www.ebi.ac.uk/pdbsum/3eeu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eeu ProSAT]</span></td></tr>
 
</table>
===Structure of the RNA pyrophosphohydrolase BdRppH in complex with Holmium===
== Function ==
 
[https://www.uniprot.org/uniprot/Q6MPX4_BDEBA Q6MPX4_BDEBA]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_19278661}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 19278661 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/3eeu_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_19278661}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3EEU is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EEU OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eeu ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:19278661</ref><references group="xtra"/>
</StructureSection>
[[Category: Bdellovibrio bacteriovorus]]
[[Category: Bdellovibrio bacteriovorus]]
[[Category: Amzel, L M.]]
[[Category: Large Structures]]
[[Category: Gabelli, S B.]]
[[Category: Amzel LM]]
[[Category: Messing, S A.]]
[[Category: Gabelli SB]]
[[Category: Hydrolase]]
[[Category: Messing SA]]
[[Category: Nudix]]
[[Category: Rna pyrophosphohydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:26:06 2009''

Latest revision as of 09:47, 21 February 2024

Structure of the RNA pyrophosphohydrolase BdRppH in complex with Holmium

3eeu, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=3eeu&oldid=4064556"