3ef5: Difference between revisions

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{{Seed}}
[[Image:3ef5.jpg|left|200px]]


<!--
==Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP==
The line below this paragraph, containing "STRUCTURE_3ef5", creates the "Structure Box" on the page.
<StructureSection load='3ef5' size='340' side='right'caption='[[3ef5]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ef5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EF5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene></td></tr>
{{STRUCTURE_3ef5|  PDB=3ef5  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ef5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ef5 OCA], [https://pdbe.org/3ef5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ef5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ef5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ef5 ProSAT]</span></td></tr>
 
</table>
===Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP===
== Function ==
 
[https://www.uniprot.org/uniprot/Q6MPX4_BDEBA Q6MPX4_BDEBA]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_19278661}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 19278661 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/3ef5_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_19278661}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3EF5 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus Bdellovibrio bacteriovorus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EF5 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ef5 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:19278661</ref><references group="xtra"/>
</StructureSection>
[[Category: Bdellovibrio bacteriovorus]]
[[Category: Bdellovibrio bacteriovorus]]
[[Category: Amzel, L M.]]
[[Category: Large Structures]]
[[Category: Gabelli, S B.]]
[[Category: Amzel LM]]
[[Category: Messing, S A.]]
[[Category: Gabelli SB]]
[[Category: Hydrolase]]
[[Category: Messing SA]]
[[Category: Nudix]]
[[Category: Rna pyrophosphohydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:26:26 2009''

Latest revision as of 09:47, 21 February 2024

Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP

3ef5, resolution 2.60Å

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