3gdo: Difference between revisions

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{{Seed}}
[[Image:3gdo.jpg|left|200px]]


<!--
==Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis==
The line below this paragraph, containing "STRUCTURE_3gdo", creates the "Structure Box" on the page.
<StructureSection load='3gdo' size='340' side='right'caption='[[3gdo]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3gdo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GDO FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdo OCA], [https://pdbe.org/3gdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gdo RCSB], [https://www.ebi.ac.uk/pdbsum/3gdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdo ProSAT]</span></td></tr>
{{STRUCTURE_3gdo| PDB=3gdo |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/IOLW_BACSU IOLW_BACSU] Catalyzes the NADP(+)-dependent oxidation of scyllo-inositol to 2,4,6/3,5-pentahydroxycyclohexanone (scyllo-inosose).<ref>PMID:20133360</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdo_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gdo ConSurf].
<div style="clear:both"></div>


===Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis===
==See Also==
 
*[[Glucanase 3D structures|Glucanase 3D structures]]
 
== References ==
==About this Structure==
<references/>
3GDO is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDO OCA].
__TOC__
</StructureSection>
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: Almo, S C.]]
[[Category: Large Structures]]
[[Category: Burley, S K.]]
[[Category: Almo SC]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Burley SK]]
[[Category: Ramagopal, U A.]]
[[Category: Ramagopal UA]]
[[Category: Toro, R.]]
[[Category: Toro R]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgxrc]]
[[Category: Oxidoreductase]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Putative oxidoreductase yvaa]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:42:53 2009''

Latest revision as of 09:54, 21 February 2024

Crystal structure of putative oxidoreductase yvaA from Bacillus subtilis

3gdo, resolution 2.03Å

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