2oyz: Difference between revisions

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New page: left|200px<br /><applet load="2oyz" size="450" color="white" frame="true" align="right" spinBox="true" caption="2oyz, resolution 1.71Å" /> '''Crystal structure of...
 
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[[Image:2oyz.gif|left|200px]]<br /><applet load="2oyz" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2oyz, resolution 1.71&Aring;" />
'''Crystal structure of unknown function protein VPA0057 from Vibrio parahaemolyticus (targeted domain 2-94)'''<br />


==About this Structure==
==Crystal structure of unknown function protein VPA0057 from Vibrio parahaemolyticus (targeted domain 2-94)==
2OYZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2OYZ OCA].  
<StructureSection load='2oyz' size='340' side='right'caption='[[2oyz]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Vibrio parahaemolyticus]]
<table><tr><td colspan='2'>[[2oyz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYZ FirstGlance]. <br>
[[Category: Abdullah, J.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.71&#8491;</td></tr>
[[Category: Chang, C.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Joachimiak, A.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyz OCA], [https://pdbe.org/2oyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oyz RCSB], [https://www.ebi.ac.uk/pdbsum/2oyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oyz ProSAT], [https://www.topsan.org/Proteins/MCSG/2oyz TOPSAN]</span></td></tr>
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
</table>
[[Category: Volkart, L-E.L.]]
== Function ==
[[Category: mcsg]]
[https://www.uniprot.org/uniprot/PPNP_VIBPA PPNP_VIBPA] Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.[HAMAP-Rule:MF_01537]
[[Category: midwest center for structural genomics]]
== Evolutionary Conservation ==
[[Category: protein structure initiative]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: psi-2]]
Check<jmol>
[[Category: structural genomics]]
  <jmolCheckbox>
[[Category: unknown function]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyz_consurf.spt"</scriptWhenChecked>
[[Category: vibrio parahaemolyticus]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 13:22:12 2007''
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oyz ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Abdullah J]]
[[Category: Chang C]]
[[Category: Joachimiak A]]
[[Category: Volkart L]]
Retrieved from "https://proteopedia.org/2oyz"