3gra: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
New page: {{Seed}} left|200px <!-- The line below this paragraph, containing "STRUCTURE_3gra", creates the "Structure Box" on the page. You may change the PDB parameter (which se...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3gra.jpg|left|200px]]


<!--
==Crystal structure of AraC family transcriptional regulator from Pseudomonas putida==
The line below this paragraph, containing "STRUCTURE_3gra", creates the "Structure Box" on the page.
<StructureSection load='3gra' size='340' side='right'caption='[[3gra]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GRA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3gra|  PDB=3gra |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gra OCA], [https://pdbe.org/3gra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gra RCSB], [https://www.ebi.ac.uk/pdbsum/3gra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gra ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gra TOPSAN]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/3gra_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gra ConSurf].
<div style="clear:both"></div>


===Crystal structure of AraC family transcriptional regulator from Pseudomonas putida===
==See Also==
 
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3GRA is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_putida_kt2440 Pseudomonas putida kt2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GRA OCA].
[[Category: Large Structures]]
[[Category: Pseudomonas putida kt2440]]
[[Category: Bagaria A]]
[[Category: Bagaria, A.]]
[[Category: Burley SK]]
[[Category: Burley, S K.]]
[[Category: Kumaran D]]
[[Category: Kumaran, D.]]
[[Category: Swaminathan S]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Swaminathan, S.]]
[[Category: 11171e]]
[[Category: Dna-binding]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-ii]]
[[Category: Structural genomic]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 10:35:24 2009''
Retrieved from "https://proteopedia.org/3gra"