2uwm: Difference between revisions

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{{Seed}}
[[Image:2uwm.png|left|200px]]


<!--
==C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA==
The line below this paragraph, containing "STRUCTURE_2uwm", creates the "Structure Box" on the page.
<StructureSection load='2uwm' size='340' side='right'caption='[[2uwm]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2uwm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Moorella_thermoacetica Moorella thermoacetica]. The August 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Selenocysteine Synthase''  by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_8 10.2210/rcsb_pdb/mom_2008_8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UWM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwm OCA], [https://pdbe.org/2uwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uwm RCSB], [https://www.ebi.ac.uk/pdbsum/2uwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwm ProSAT]</span></td></tr>
{{STRUCTURE_2uwm|  PDB=2uwm  |  SCENE=  }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q2RFK4_MOOTA Q2RFK4_MOOTA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uw/2uwm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uwm ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Selenocysteine (Sec) is the "21st" amino acid and is genetically encoded by an unusual incorporation system. The stop codon UGA becomes a Sec codon when the selenocysteine insertion sequence (SECIS) exists downstream of UGA. Sec incorporation requires a specific elongation factor, SelB, which recognizes tRNA(Sec) via use of an EF-Tu-like domain and the SECIS mRNA hairpin via use of a C-terminal domain (SelB-C). SelB functions in multiple translational steps: binding to SECIS mRNA and tRNA(Sec), delivery of tRNA(Sec) onto an A site, GTP hydrolysis, and release from tRNA and mRNA. However, this dynamic mechanism remains to be revealed. Here, we report a large domain rearrangement in the structure of SelB-C complexed with RNA. Surprisingly, the interdomain region forms new interactions with the phosphate backbone of a neighboring RNA, distinct from SECIS RNA binding. This SelB-RNA interaction is sequence independent, possibly reflecting SelB-tRNA/-rRNA recognitions. Based on these data, the dynamic SelB-ribosome-mRNA-tRNA interactions will be discussed.


===C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA===
Structural basis for dynamic interdomain movement and RNA recognition of the selenocysteine-specific elongation factor SelB.,Ose T, Soler N, Rasubala L, Kuroki K, Kohda D, Fourmy D, Yoshizawa S, Maenaka K Structure. 2007 May;15(5):577-86. PMID:17502103<ref>PMID:17502103</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2uwm" style="background-color:#fffaf0;"></div>


<!--
==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_17502103}}, adds the Publication Abstract to the page
*[[Elongation factor 3D structures|Elongation factor 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 17502103 is the PubMed ID number.
*[[SelB|SelB]]
-->
== References ==
{{ABSTRACT_PUBMED_17502103}}
<references/>
 
__TOC__
==About this Structure==
</StructureSection>
2UWM is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Moorella_thermoacetica Moorella thermoacetica]. The August 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Selenocysteine Synthase''  by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_8 10.2210/rcsb_pdb/mom_2008_8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWM OCA].
[[Category: Large Structures]]
 
==Reference==
<ref group="xtra">PMID:17502103</ref><references group="xtra"/>
[[Category: Moorella thermoacetica]]
[[Category: Moorella thermoacetica]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: Selenocysteine Synthase]]
[[Category: Selenocysteine Synthase]]
[[Category: Fourmy, D.]]
[[Category: Fourmy D]]
[[Category: Kohda, D.]]
[[Category: Kohda D]]
[[Category: Kuroki, K.]]
[[Category: Kuroki K]]
[[Category: Maenaka, K.]]
[[Category: Maenaka K]]
[[Category: Ose, T.]]
[[Category: Ose T]]
[[Category: Rasubala, L.]]
[[Category: Rasubala L]]
[[Category: Soler, N.]]
[[Category: Soler N]]
[[Category: Yoshizawa, S.]]
[[Category: Yoshizawa S]]
[[Category: Gtp-binding]]
[[Category: Nucleotide-binding]]
[[Category: Protein biosynthesis]]
[[Category: Selenocysteine-specific elongation factor]]
[[Category: Translation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Apr 19 08:52:24 2009''

Latest revision as of 14:56, 13 December 2023

C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA

2uwm, resolution 2.31Å

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