3gyd: Difference between revisions

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{{Seed}}
[[Image:3gyd.jpg|left|200px]]


<!--
==Crystal structure of a cyclic nucleotide-binding domain (mfla_1926) from methylobacillus flagellatus kt at 1.79 A resolution==
The line below this paragraph, containing "STRUCTURE_3gyd", creates the "Structure Box" on the page.
<StructureSection load='3gyd' size='340' side='right'caption='[[3gyd]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3gyd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylobacillus_flagellatus_KT Methylobacillus flagellatus KT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GYD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3gyd|  PDB=3gyd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gyd OCA], [https://pdbe.org/3gyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gyd RCSB], [https://www.ebi.ac.uk/pdbsum/3gyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gyd ProSAT], [https://www.topsan.org/Proteins/JCSG/3gyd TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of Cyclic nucleotide-binding domain (YP_546034.1) from Methylobacillus flagellatus KT at 1.79 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q1GZZ4_METFK Q1GZZ4_METFK]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3GYD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Methylobacillus_flagellatus_kt Methylobacillus flagellatus kt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GYD OCA].  
Check<jmol>
[[Category: Methylobacillus flagellatus kt]]
  <jmolCheckbox>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gyd_consurf.spt"</scriptWhenChecked>
[[Category: Cyclic nucleotide-binding domain]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Jcsg]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joint center for structural genomic]]
  </jmolCheckbox>
[[Category: Nucleotide binding protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gyd ConSurf].
[[Category: Protein structure initiative]]
<div style="clear:both"></div>
[[Category: Psi-2]]
__TOC__
[[Category: Structural genomic]]
</StructureSection>
[[Category: Yp_546034 1]]
[[Category: Large Structures]]
 
[[Category: Methylobacillus flagellatus KT]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 11:44:57 2009''

Latest revision as of 01:52, 21 November 2024

Crystal structure of a cyclic nucleotide-binding domain (mfla_1926) from methylobacillus flagellatus kt at 1.79 A resolution

3gyd, resolution 1.79Å

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