1vd6: Difference between revisions

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New page: left|200px<br /><applet load="1vd6" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vd6, resolution 1.30Å" /> '''Crystal Structure of...
 
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[[Image:1vd6.gif|left|200px]]<br /><applet load="1vd6" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vd6, resolution 1.30&Aring;" />
'''Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol'''<br />


==About this Structure==
==Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol==
1VD6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with GOL as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VD6 OCA].
<StructureSection load='1vd6' size='340' side='right'caption='[[1vd6]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
[[Category: Glycerophosphodiester phosphodiesterase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[1vd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD6 FirstGlance]. <br>
[[Category: Thermus thermophilus]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
[[Category: Ishijima, J.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd6 OCA], [https://pdbe.org/1vd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd6 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd6 ProSAT], [https://www.topsan.org/Proteins/RSGI/1vd6 TOPSAN]</span></td></tr>
[[Category: Yutani, K.]]
</table>
[[Category: GOL]]
== Function ==
[[Category: glycerol complex]]
[https://www.uniprot.org/uniprot/Q53W25_THET8 Q53W25_THET8]  
[[Category: glycerophosphodiester phosphodiesterase]]
== Evolutionary Conservation ==
[[Category: glycerophosphoryl diester phosphodiesterase]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: hb8]]
Check<jmol>
[[Category: riken structural genomics/proteomics initiative]]
  <jmolCheckbox>
[[Category: rsgi]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd6_consurf.spt"</scriptWhenChecked>
[[Category: structural genomics]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: thermus thermophilus]]
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd6 ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 22:11:06 2007''
==See Also==
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Ishijima J]]
[[Category: Yutani K]]
Retrieved from "https://proteopedia.org/1vd6"