2zxq: Difference between revisions

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{{Seed}}
[[Image:2zxq.jpg|left|200px]]


<!--
==Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF)==
The line below this paragraph, containing "STRUCTURE_2zxq", creates the "Structure Box" on the page.
<StructureSection load='2zxq' size='340' side='right'caption='[[2zxq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2zxq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_longum Bifidobacterium longum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZXQ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
{{STRUCTURE_2zxq|  PDB=2zxq  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zxq OCA], [https://pdbe.org/2zxq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zxq RCSB], [https://www.ebi.ac.uk/pdbsum/2zxq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zxq ProSAT]</span></td></tr>
 
</table>
===Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF)===
== Function ==
 
[https://www.uniprot.org/uniprot/Q3T552_BIFL2 Q3T552_BIFL2]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_19502354}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 19502354 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/2zxq_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_19502354}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2ZXQ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_longum Bifidobacterium longum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXQ OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zxq ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:19502354</ref><ref group="xtra">PMID:16141207</ref><references group="xtra"/>
</StructureSection>
[[Category: Bifidobacterium longum]]
[[Category: Bifidobacterium longum]]
[[Category: Glycopeptide alpha-N-acetylgalactosaminidase]]
[[Category: Large Structures]]
[[Category: Ashida, H.]]
[[Category: Ashida H]]
[[Category: Fushinobu, S.]]
[[Category: Fushinobu S]]
[[Category: Katayama, T.]]
[[Category: Katayama T]]
[[Category: Kitaoka, M.]]
[[Category: Kitaoka M]]
[[Category: Suzuki, R.]]
[[Category: Suzuki R]]
[[Category: Yamamoto, K.]]
[[Category: Yamamoto K]]
[[Category: Broken tim barrel]]
[[Category: Glycosidase]]
[[Category: Hydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 17 10:22:56 2009''
Retrieved from "https://proteopedia.org/2zxq"