1vrm: Difference between revisions

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New page: left|200px<br /><applet load="1vrm" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vrm, resolution 1.580Å" /> '''Crystal structure o...
 
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[[Image:1vrm.gif|left|200px]]<br /><applet load="1vrm" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1vrm, resolution 1.580&Aring;" />
'''Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution'''<br />


==About this Structure==
==Crystal structure of the apbe protein (tm1553) from thermotoga maritima msb8 at 1.58 A resolution==
1VRM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8] with UNL, MRD and MPD as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VRM OCA].  
<StructureSection load='1vrm' size='340' side='right'caption='[[1vrm]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[1vrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VRM FirstGlance]. <br>
Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution., Han GW, Sri Krishna S, Schwarzenbacher R, McMullan D, Ginalski K, Elsliger MA, Brittain SM, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod H, Canaves JM, Chiu HJ, DiDonato M, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Morse AT, Moy K, Nigoghossian E, Oommachen S, Ouyang J, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2006 Sep 1;64(4):1083-90. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16779835 16779835]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
[[Category: Single protein]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Thermotoga maritima msb8]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vrm OCA], [https://pdbe.org/1vrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vrm RCSB], [https://www.ebi.ac.uk/pdbsum/1vrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vrm ProSAT], [https://www.topsan.org/Proteins/JCSG/1vrm TOPSAN]</span></td></tr>
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
</table>
[[Category: MPD]]
== Function ==
[[Category: MRD]]
[https://www.uniprot.org/uniprot/Q9X1N9_THEMA Q9X1N9_THEMA]  
[[Category: UNL]]
== Evolutionary Conservation ==
[[Category: hypothetical protein]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: jcsg]]
Check<jmol>
[[Category: joint center for structural genomics]]
  <jmolCheckbox>
[[Category: protein structure initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/1vrm_consurf.spt"</scriptWhenChecked>
[[Category: psi]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: structural genomics]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: tm1553]]
  </jmolCheckbox>
 
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vrm ConSurf].
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sat Nov 24 23:06:30 2007''
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermotoga maritima MSB8]]
Retrieved from "https://proteopedia.org/1vrm"