3dku: Difference between revisions

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{{Seed}}
[[Image:3dku.jpg|left|200px]]


<!--
==Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1==
The line below this paragraph, containing "STRUCTURE_3dku", creates the "Structure Box" on the page.
<StructureSection load='3dku' size='340' side='right'caption='[[3dku]], [[Resolution|resolution]] 2.69&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dku]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_APEC_O1 Escherichia coli APEC O1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.69&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dku OCA], [https://pdbe.org/3dku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dku RCSB], [https://www.ebi.ac.uk/pdbsum/3dku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dku ProSAT]</span></td></tr>
{{STRUCTURE_3dku|  PDB=3dku  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1===
[https://www.uniprot.org/uniprot/NUDJ_ECOK1 NUDJ_ECOK1]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3DKU is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_apec_o1 Escherichia coli apec o1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKU OCA].  
  <jmolCheckbox>
[[Category: Escherichia coli apec o1]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dku_consurf.spt"</scriptWhenChecked>
[[Category: Choi, J Y.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Hong, M K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Jung, J H.]]
  </jmolCheckbox>
[[Category: Jung, J W.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dku ConSurf].
[[Category: Kang, L W.]]
<div style="clear:both"></div>
[[Category: Kim, J K.]]
__TOC__
[[Category: Nucleoside triphosphatase]]
</StructureSection>
[[Category: Nudix hydrolase]]
[[Category: Escherichia coli APEC O1]]
[[Category: Orf153]]
[[Category: Large Structures]]
[[Category: Ymfb]]
[[Category: Choi JY]]
 
[[Category: Hong MK]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  1 09:36:06 2009''
[[Category: Jung JH]]
[[Category: Jung JW]]
[[Category: Kang LW]]
[[Category: Kim JK]]
Retrieved from "https://proteopedia.org/3dku"