3dkr: Difference between revisions

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{{Seed}}
[[Image:3dkr.jpg|left|200px]]


<!--
==Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism==
The line below this paragraph, containing "STRUCTURE_3dkr", creates the "Structure Box" on the page.
<StructureSection load='3dkr' size='340' side='right'caption='[[3dkr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dkr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacticaseibacillus_rhamnosus_HN001 Lacticaseibacillus rhamnosus HN001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKR FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
{{STRUCTURE_3dkr|  PDB=3dkr  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dkr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dkr OCA], [https://pdbe.org/3dkr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dkr RCSB], [https://www.ebi.ac.uk/pdbsum/3dkr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dkr ProSAT]</span></td></tr>
 
</table>
===Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism===
== Function ==
 
[https://www.uniprot.org/uniprot/B2CZF3_LACRH B2CZF3_LACRH]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3DKR is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_rhamnosus Lactobacillus rhamnosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKR OCA].  
Check<jmol>
[[Category: Lactobacillus rhamnosus]]
  <jmolCheckbox>
[[Category: Bennett, M D.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dkr_consurf.spt"</scriptWhenChecked>
[[Category: Delabre, M L.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Holland, R.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Norris, G E.]]
  </jmolCheckbox>
[[Category: Alpha beta hydrolase]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dkr ConSurf].
[[Category: Catalytic triad]]
<div style="clear:both"></div>
[[Category: Esterase]]
__TOC__
[[Category: Mechanism]]
</StructureSection>
[[Category: Rotation]]
[[Category: Lacticaseibacillus rhamnosus HN001]]
 
[[Category: Large Structures]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  1 09:36:06 2009''
[[Category: Bennett MD]]
[[Category: Delabre M-L]]
[[Category: Holland R]]
[[Category: Norris GE]]

Latest revision as of 15:11, 1 November 2023

Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism

3dkr, resolution 1.60Å

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