3dsy: Difference between revisions

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{{Seed}}
[[Image:3dsy.jpg|left|200px]]


<!--
==E(L212)Q mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides==
The line below this paragraph, containing "STRUCTURE_3dsy", creates the "Structure Box" on the page.
<StructureSection load='3dsy' size='340' side='right'caption='[[3dsy]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dsy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DSY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DSY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPH:BACTERIOPHEOPHYTIN+A'>BPH</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=SPN:SPEROIDENONE'>SPN</scene>, <scene name='pdbligand=U10:UBIQUINONE-10'>U10</scene></td></tr>
{{STRUCTURE_3dsy|  PDB=3dsy  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dsy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dsy OCA], [https://pdbe.org/3dsy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dsy RCSB], [https://www.ebi.ac.uk/pdbsum/3dsy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dsy ProSAT]</span></td></tr>
 
</table>
===E(L212)Q mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides===
== Function ==
 
[https://www.uniprot.org/uniprot/RCEL_CERSP RCEL_CERSP] The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3DSY is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DSY OCA].  
Check<jmol>
[[Category: Rhodobacter sphaeroides]]
  <jmolCheckbox>
[[Category: Pokkuluri, P R.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/3dsy_consurf.spt"</scriptWhenChecked>
[[Category: Schiffer, M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Membrane protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Mutant photosynthetic reaction center]]
  </jmolCheckbox>
[[Category: Photosynthesis]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dsy ConSurf].
[[Category: Proton transfer]]
<div style="clear:both"></div>
 
__TOC__
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  1 09:36:36 2009''
</StructureSection>
[[Category: Cereibacter sphaeroides]]
[[Category: Large Structures]]
[[Category: Pokkuluri PR]]
[[Category: Schiffer M]]

Latest revision as of 09:06, 13 August 2026

E(L212)Q mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides

3dsy, resolution 3.00Å

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