3ezj: Difference between revisions

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{{Seed}}
[[Image:3ezj.png|left|200px]]


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==Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody==
The line below this paragraph, containing "STRUCTURE_3ezj", creates the "Structure Box" on the page.
<StructureSection load='3ezj' size='340' side='right'caption='[[3ezj]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ezj]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_ETEC_H10407 Escherichia coli ETEC H10407] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EZJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EZJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_3ezj|  PDB=3ezj  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ezj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ezj OCA], [https://pdbe.org/3ezj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ezj RCSB], [https://www.ebi.ac.uk/pdbsum/3ezj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ezj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q707C1_ECOLX Q707C1_ECOLX]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ez/3ezj_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ezj ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Secretins are among the largest bacterial outer membrane proteins known. Here we report the crystal structure of the periplasmic N-terminal domain of GspD (peri-GspD) from the type 2 secretion system (T2SS) secretin in complex with a nanobody, the VHH domain of a heavy-chain camelid antibody. Two different crystal forms contained the same compact peri-GspD:nanobody heterotetramer. The nanobody contacts peri-GspD mainly via CDR3 and framework residues. The peri-GspD structure reveals three subdomains, with the second and third subdomains exhibiting the KH fold which also occurs in ring-forming proteins of the type 3 secretion system. The first subdomain of GspD is related to domains in phage tail proteins and outer membrane TonB-dependent receptors. A dodecameric peri-GspD model is proposed in which a solvent-accessible beta strand of the first subdomain interacts with secreted proteins and/or T2SS partner proteins by beta strand complementation.


===Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody===
Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody.,Korotkov KV, Pardon E, Steyaert J, Hol WG Structure. 2009 Feb 13;17(2):255-65. PMID:19217396<ref>PMID:19217396</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3ezj" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_19217396}}, adds the Publication Abstract to the page
*[[General secretion pathway protein 3D structures|General secretion pathway protein 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 19217396 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_19217396}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Escherichia coli ETEC H10407]]
3EZJ is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EZJ OCA].
 
==Reference==
<ref group="xtra">PMID:19217396</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Lama glama]]
[[Category: Lama glama]]
[[Category: Hol, W G.]]
[[Category: Large Structures]]
[[Category: Korotkov, K V]]
[[Category: Hol WG]]
[[Category: Pardon, E.]]
[[Category: Korotkov KV]]
[[Category: Steyaert, J.]]
[[Category: Pardon E]]
[[Category: Complex]]
[[Category: Steyaert J]]
[[Category: General secretory pathway]]
[[Category: Immune system]]
[[Category: Protein transport]]
[[Category: Secretin]]
[[Category: Single chain antibody]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat Jul  4 18:10:53 2009''
Retrieved from "https://proteopedia.org/3ezj"