3dpb: Difference between revisions

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{{Seed}}
[[Image:3dpb.jpg|left|200px]]


<!--
==Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Ala9Val, Ala11Val, and Leu13Val mutations in the Gd donor strand==
The line below this paragraph, containing "STRUCTURE_3dpb", creates the "Structure Box" on the page.
<StructureSection load='3dpb' size='340' side='right'caption='[[3dpb]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dpb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DPB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dpb OCA], [https://pdbe.org/3dpb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dpb RCSB], [https://www.ebi.ac.uk/pdbsum/3dpb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dpb ProSAT]</span></td></tr>
{{STRUCTURE_3dpb|  PDB=3dpb  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Ala9Val, Ala11Val, and Leu13Val mutations in the Gd donor strand===
[https://www.uniprot.org/uniprot/CAF1M_YERPE CAF1M_YERPE] Has a stimulatory role for the envelope antigen F1 secretion. It seems to interact with the subunit polypeptide and to prevent it from digestion by a protease.
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3DPB is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DPB OCA].  
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/3dpb_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dpb ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Yersinia pestis]]
[[Category: Yersinia pestis]]
[[Category: Fooks, L J.]]
[[Category: Fooks LJ]]
[[Category: Knight, S D.]]
[[Category: Knight SD]]
[[Category: MacIntyre, S.]]
[[Category: MacIntyre S]]
[[Category: Moslehi-Mohebi, E.]]
[[Category: Moslehi-Mohebi E]]
[[Category: Tischenko, V.]]
[[Category: Tischenko V]]
[[Category: Yu, X.]]
[[Category: Yu X]]
[[Category: Zavialov, A V.]]
[[Category: Zavialov AV]]
[[Category: Beta barrel]]
[[Category: Capsule]]
[[Category: Chaperone]]
[[Category: Chaperone/structural protein complex]]
[[Category: Donor strand complementation]]
[[Category: Fimbriae]]
[[Category: Immunoglobulin domain]]
[[Category: Periplasm]]
[[Category: Plasmid]]
[[Category: Protein-protein complex]]
[[Category: Secreted]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 15 13:49:05 2009''
Retrieved from "https://proteopedia.org/3dpb"