3cfz: Difference between revisions

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[[Image:3cfz.png|left|200px]]


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==Crystal structure of M. jannaschii periplasmic binding protein ModA/WtpA with bound tungstate==
The line below this paragraph, containing "STRUCTURE_3cfz", creates the "Structure Box" on the page.
<StructureSection load='3cfz' size='340' side='right'caption='[[3cfz]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cfz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CFZ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=WO4:TUNGSTATE(VI)ION'>WO4</scene></td></tr>
{{STRUCTURE_3cfz|  PDB=3cfz  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cfz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cfz OCA], [https://pdbe.org/3cfz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cfz RCSB], [https://www.ebi.ac.uk/pdbsum/3cfz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cfz ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/WTPA_METJA WTPA_METJA] Part of the ABC transporter complex WtpABC involved in molybdate/tungstate import. Binds tungstate and molybdate (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/3cfz_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cfz ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). These substrates are captured by an external, high-affinity binding protein, and delivered to ATP binding cassette transporters, which move them across the cell membrane. We have recently reported a crystal structure of the molybdate/tungstate binding protein ModA/WtpA from Archaeoglobus fulgidus, which revealed an octahedrally coordinated central metal atom. By contrast, the previously determined structures of three bacterial homologs showed tetracoordinate molybdenum and tungsten atoms in their binding pockets. Until then, coordination numbers above four had only been found for molybdenum/tungsten in metalloenzymes where these metal atoms are part of the catalytic cofactors and coordinated by mostly non-oxygen ligands. We now report a high-resolution structure of A. fulgidus ModA/WtpA, as well as crystal structures of four additional homologs, all bound to tungstate. These crystal structures match X-ray absorption spectroscopy measurements from soluble, tungstate-bound protein, and reveal the details of the distorted octahedral coordination. Our results demonstrate that the distorted octahedral geometry is not an exclusive feature of the A. fulgidus protein, and suggest distinct binding modes of the binding proteins from archaea and bacteria.


===Crystal structure of M. jannaschii periplasmic binding protein ModA/WtpA with bound tungstate===
Distorted octahedral coordination of tungstate in a subfamily of specific binding proteins.,Hollenstein K, Comellas-Bigler M, Bevers LE, Feiters MC, Meyer-Klaucke W, Hagedoorn PL, Locher KP J Biol Inorg Chem. 2009 Feb 21. PMID:19234723<ref>PMID:19234723</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 3cfz" style="background-color:#fffaf0;"></div>


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==See Also==
The line below this paragraph, {{ABSTRACT_PUBMED_19234723}}, adds the Publication Abstract to the page
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 19234723 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_19234723}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
3CFZ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFZ OCA].
 
==Reference==
<ref group="xtra">PMID:19234723</ref><references group="xtra"/>
[[Category: Methanocaldococcus jannaschii]]
[[Category: Methanocaldococcus jannaschii]]
[[Category: Comellas-Bigler, M.]]
[[Category: Comellas-Bigler M]]
[[Category: Hollenstein, K.]]
[[Category: Hollenstein K]]
[[Category: Locher, K P.]]
[[Category: Locher KP]]
[[Category: Abc transporter]]
[[Category: Binding protein]]
[[Category: Crystal structure]]
[[Category: Ligand]]
[[Category: Molybdate]]
[[Category: Transport protein]]
[[Category: Tungstate]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 20:22:33 2009''

Latest revision as of 09:01, 13 August 2026

Crystal structure of M. jannaschii periplasmic binding protein ModA/WtpA with bound tungstate

3cfz, resolution 1.70Å

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