3hia: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3hia.jpg|left|200px]]


<!--
==Crystal structure of the choline binding domain of Spr1274 in Streptococcus pneumoniae==
The line below this paragraph, containing "STRUCTURE_3hia", creates the "Structure Box" on the page.
<StructureSection load='3hia' size='340' side='right'caption='[[3hia]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3hia]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_R6 Streptococcus pneumoniae R6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HIA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HIA FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.38&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PC:PHOSPHOCHOLINE'>PC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3hia|  PDB=3hia  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hia OCA], [https://pdbe.org/3hia PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hia RCSB], [https://www.ebi.ac.uk/pdbsum/3hia PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hia ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q8DP99_STRR6 Q8DP99_STRR6]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hi/3hia_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hia ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Spr1274 is a putative choline-binding protein that is bound to the cell wall of Streptococcus pneumoniae through noncovalent interactions with the choline moieties of teichoic and lipoteichoic acids. Its function is still unknown. The crystal structure of the choline-binding domain of Spr1274 (residues 44-129) was solved at 2.38 A resolution with three molecules in the asymmetric unit. It may provide a structural basis for functional analysis of choline-binding proteins.


===Crystal structure of the choline binding domain of Spr1274 in Streptococcus pneumoniae===
Structure of the choline-binding domain of Spr1274 in Streptococcus pneumoniae.,Zhang Z, Li W, Frolet C, Bao R, di Guilmi AM, Vernet T, Chen Y Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Aug 1;65(Pt, 8):757-61. Epub 2009 Jul 21. PMID:19652332<ref>PMID:19652332</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
==About this Structure==
</div>
3HIA is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_r6 Streptococcus pneumoniae r6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HIA OCA].
<div class="pdbe-citations 3hia" style="background-color:#fffaf0;"></div>
[[Category: Streptococcus pneumoniae r6]]
== References ==
[[Category: Bao, R.]]
<references/>
[[Category: Chen, Y X.]]
__TOC__
[[Category: Jiang, Y L.]]
</StructureSection>
[[Category: Li, W Z.]]
[[Category: Large Structures]]
[[Category: Zhang, Z Y.]]
[[Category: Streptococcus pneumoniae R6]]
[[Category: Zhou, C Z.]]
[[Category: Bao R]]
[[Category: Beta hairpin]]
[[Category: Chen Y-X]]
[[Category: Choline-binding protein]]
[[Category: Jiang Y-L]]
 
[[Category: Li W-Z]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug  5 11:01:45 2009''
[[Category: Zhang Z-Y]]
[[Category: Zhou C-Z]]
Retrieved from "https://proteopedia.org/3hia"