2kmn: Difference between revisions
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New page: '''Unreleased structure''' The entry 2kmn is ON HOLD Authors: McElroy, C.A., Amero, C.D., Byerly, D.W., Foster, M.P. Description: Solution structure of peptide deformylase complexed wi... |
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==Solution structure of peptide deformylase complexed with actinonin== | |||
<StructureSection load='2kmn' size='340' side='right'caption='[[2kmn]]' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2kmn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMN FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmn OCA], [https://pdbe.org/2kmn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmn RCSB], [https://www.ebi.ac.uk/pdbsum/2kmn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmn ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmn_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kmn ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli K-12]] | |||
[[Category: Large Structures]] | |||
[[Category: Amero CD]] | |||
[[Category: Byerly DW]] | |||
[[Category: Foster MP]] | |||
[[Category: McElroy CA]] | |||
Latest revision as of 09:40, 22 May 2024
Solution structure of peptide deformylase complexed with actinonin
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