2wsv: Difference between revisions
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New page: '''Unreleased structure''' The entry 2wsv is ON HOLD until Paper Publication Authors: Guardado-Calvo, P., Munoz, E.M., Llamas-Saiz, A.L., Fox, G.C., Glasgow, J.N., van Raaij, M.J. Desc... |
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==Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with lactose== | |||
<StructureSection load='2wsv' size='340' side='right'caption='[[2wsv]], [[Resolution|resolution]] 2.00Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2wsv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porcine_adenovirus_4 Porcine adenovirus 4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WSV FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=PRD_900008:alpha-lactose'>PRD_900008</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wsv OCA], [https://pdbe.org/2wsv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wsv RCSB], [https://www.ebi.ac.uk/pdbsum/2wsv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wsv ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/Q83467_ADEP4 Q83467_ADEP4] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ws/2wsv_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wsv ConSurf]. | |||
<div style="clear:both"></div> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Adenovirus isolate NADC-1, a strain of porcine adenovirus type 4, has a fiber containing an N-terminal virus attachment region, shaft and head domains, and a C-terminal galectin domain connected to the head by an RGD-containing sequence. The crystal structure of the head domain is similar to previously solved adenovirus fiber head domains, but specific residues for binding the coxsackievirus and adenovirus receptor (CAR), CD46, or sialic acid are not conserved. The structure of the galectin domain reveals an interaction interface between its two carbohydrate recognition domains, locating both sugar binding sites face to face. Sequence evidence suggests other tandem-repeat galectins have the same arrangement. We show that the galectin domain binds carbohydrates containing lactose and N-acetyl-lactosamine units, and we present structures of the galectin domain with lactose, N-acetyl-lactosamine, 3-aminopropyl-lacto-N-neotetraose, and 2-aminoethyl-tri(N-acetyl-lactosamine), confirming the domain as a bona fide galectin domain. | |||
Crystallographic structure of porcine adenovirus type 4 fiber head and galectin domains.,Guardado-Calvo P, Munoz EM, Llamas-Saiz AL, Fox GC, Kahn R, Curiel DT, Glasgow JN, van Raaij MJ J Virol. 2010 Oct;84(20):10558-68. Epub 2010 Aug 4. PMID:20686025<ref>PMID:20686025</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 2wsv" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Porcine adenovirus 4]] | |||
[[Category: Fox GC]] | |||
[[Category: Glasgow JN]] | |||
[[Category: Guardado-Calvo P]] | |||
[[Category: Llamas-Saiz AL]] | |||
[[Category: Munoz EM]] | |||
[[Category: Van Raaij MJ]] | |||
Latest revision as of 10:15, 20 December 2023
Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with lactose
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