2kmn: Difference between revisions

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{{Seed}}
[[Image:2kmn.jpg|left|200px]]


<!--
==Solution structure of peptide deformylase complexed with actinonin==
The line below this paragraph, containing "STRUCTURE_2kmn", creates the "Structure Box" on the page.
<StructureSection load='2kmn' size='340' side='right'caption='[[2kmn]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2kmn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KMN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_2kmn|  PDB=2kmn  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmn OCA], [https://pdbe.org/2kmn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kmn RCSB], [https://www.ebi.ac.uk/pdbsum/2kmn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kmn ProSAT]</span></td></tr>
 
</table>
===Solution structure of peptide deformylase complexed with actinonin===
== Function ==
 
[https://www.uniprot.org/uniprot/DEF_ECOLI DEF_ECOLI] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2KMN is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMN OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmn_consurf.spt"</scriptWhenChecked>
<ref group="xtra">PMID:19627112</ref><references group="xtra"/>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Escherichia coli k-12]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Peptide deformylase]]
  </jmolCheckbox>
[[Category: Amero, C D.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kmn ConSurf].
[[Category: Byerly, D W.]]
<div style="clear:both"></div>
[[Category: Foster, M P.]]
__TOC__
[[Category: McElroy, C A.]]
</StructureSection>
[[Category: Actinonin]]
[[Category: Escherichia coli K-12]]
[[Category: Hydrolase]]
[[Category: Large Structures]]
[[Category: Hydrolase/antibiotic complex]]
[[Category: Amero CD]]
[[Category: Iron]]
[[Category: Byerly DW]]
[[Category: Metal-binding]]
[[Category: Foster MP]]
[[Category: Nmr]]
[[Category: McElroy CA]]
[[Category: Peptide deformylase]]
[[Category: Protein biosynthesis]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 21 16:37:56 2009''
Retrieved from "https://proteopedia.org/2kmn"