3ikd: Difference between revisions

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{{Seed}}
[[Image:3ikd.jpg|left|200px]]


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==Structure-Based Design of Novel PIN1 Inhibitors (I)==
The line below this paragraph, containing "STRUCTURE_3ikd", creates the "Structure Box" on the page.
<StructureSection load='3ikd' size='340' side='right'caption='[[3ikd]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ikd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IKD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=J9Z:(2R)-2-[(1-BENZOTHIOPHEN-2-YLCARBONYL)AMINO]-3-PHENYLPROPYL+PHOSPHATE'>J9Z</scene></td></tr>
{{STRUCTURE_3ikd| PDB=3ikd |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ikd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ikd OCA], [https://pdbe.org/3ikd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ikd RCSB], [https://www.ebi.ac.uk/pdbsum/3ikd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ikd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PIN1_HUMAN PIN1_HUMAN] Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation. Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.<ref>PMID:15664191</ref> <ref>PMID:16644721</ref> <ref>PMID:21497122</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/3ikd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ikd ConSurf].
<div style="clear:both"></div>


===Structure-Based Design of Novel PIN1 Inhibitors (I)===
==See Also==
 
*[[Peptidyl-prolyl cis-trans isomerase 3D structures|Peptidyl-prolyl cis-trans isomerase 3D structures]]
 
== References ==
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<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_19729306}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 19729306 is the PubMed ID number.
</StructureSection>
-->
{{ABSTRACT_PUBMED_19729306}}
 
==About this Structure==
3IKD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IKD OCA].
 
==Reference==
<ref group="xtra">PMID:19729306</ref><references group="xtra"/>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Peptidylprolyl isomerase]]
[[Category: Large Structures]]
[[Category: Ferre, R.]]
[[Category: Ferre R]]
[[Category: Greasley, S.]]
[[Category: Greasley S]]
[[Category: Matthews, D.]]
[[Category: Matthews D]]
[[Category: Parge, H.]]
[[Category: Parge H]]
[[Category: Cell cycle]]
[[Category: Isomerase]]
[[Category: Nucleus]]
[[Category: Phosphoprotein]]
[[Category: Ppiase]]
[[Category: Rotamase]]
[[Category: Sbdd]]
[[Category: Small molecule]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 08:41:33 2009''
Retrieved from "https://proteopedia.org/3ikd"