Molecular Playground/Procedures: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) →Installing a state script from Proteopedia: adding content |
Eric Martz (talk | contribs) →Installing a state script from Proteopedia: adding content |
||
| Line 64: | Line 64: | ||
<ol type="a"><!-- sublist --> | <ol type="a"><!-- sublist --> | ||
<li><!-- sublist --> | <li><!-- sublist --> | ||
'''Put Jmol.jar in ''yourMolecule'' folder.''' Download Jmol: At [http://jmol.org Jmol.Org], select Download (upper right), go to the Jmol Downloads Page, and download the current version as a binary.zip file. Unzip the file (this is automatic on Macs), and copy the file Jmol.jar. This is the Jmol application. Paste Jmol.jar into yourMolecule folder. | '''Put Jmol.jar in ''yourMolecule'' folder.''' Download Jmol: At [http://jmol.org Jmol.Org], select Download (upper right), go to the Jmol Downloads Page, and download the current version as a binary.zip file. Unzip the file (this is automatic on Macs), and copy the file Jmol.jar (one of a large number of files in the zipped download). This is the Jmol application. Paste Jmol.jar into yourMolecule folder. | ||
</li><li><!-- sublist --> | </li><li><!-- sublist --> | ||
Put a copy of the [[PDB file]] used in your module in the ''yourMolecule'' folder. In Proteopedia, search for your [[PDB code]], and on the page titled with that PDB code, use the ''coordinates: save as pdb'' link to download the file. | Put a copy of the [[PDB file]] used in your module in the ''yourMolecule'' folder. In Proteopedia, search for your [[PDB code]], and on the page titled with that PDB code, use the ''coordinates: save as pdb'' link to download the file. | ||
