Molecular Playground/Procedures: Difference between revisions
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:*pdbFileName | :*pdbFileName | ||
:*localStateScript | :*localStateScript | ||
:*bannerMessage: Create a short, one-line description of your scene, mentioning the name of the molecule, and what is important about the scene or the molecule. | :*bannerMessage: Create a short, one-line description of your scene, mentioning the name of the molecule, and what is important about the scene or the molecule. Remember to design this for the general public, including non-scientists. | ||
</li><li><!-- sublist --> | </li><li><!-- sublist --> | ||
'''Test''' your scripts. You should now have 6 files in the yourMolecule folder: Jmol.jar, yourMolecule.pdb, yourMolecule_state.spt, and the three .spt files listed above. In the Jmol application's white ''Jmol Script Console'' window (bottom section), enter '''script MP_yourMolecule.spt'''. You should see your molecule, in your scene, with your banner at the top. (If not, re-check the preceding steps.) You will also see an inappropriate color key left over from the Relenza module. | '''Test''' your scripts. You should now have 6 files in the yourMolecule folder: Jmol.jar, yourMolecule.pdb, yourMolecule_state.spt, and the three .spt files listed above. In the Jmol application's white ''Jmol Script Console'' window (bottom section), enter '''script MP_yourMolecule.spt'''. You should see your molecule, in your scene, with your banner at the top. (If not, re-check the preceding steps.) You will also see an inappropriate color key left over from the Relenza module. | ||
