Proteopedia:Problems: Difference between revisions
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==Problems, more urgent== | ==Problems, more urgent== | ||
<span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Non-standard residues''' should be limited to residues that are also protein or nucleic. For example in [[1au1]], BGC and G6D are carbohydrate and hence should be listed under Ligands instead of Non-Standard Residues. (See [[Non-Standard Residues]] and [[Ligands]] for more examples.) [[User:Eric Martz|Eric Martz]] 21:24, 21 March 2010 (IST). Page for [[1au1]] was reseeded. The correction will gradually propagate to other pages. | <span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Non-standard residues''' should be limited to residues that are also protein or nucleic. For example in [[1au1]], BGC and G6D are carbohydrate and hence should be listed under Ligands instead of Non-Standard Residues. (See [[Non-Standard Residues]] and [[Ligands]] for more examples.) [[User:Eric Martz|Eric Martz]] 21:24, 21 March 2010 (IST). '''''Solved''''' by [[User:Jaime Prilusky|Jaime Prilusky]] 14:40, 22 March 2010 (IST) Page for [[1au1]] was reseeded. The correction will gradually propagate to other pages. | ||
<span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Wrong chains''': When you ''show Evolutionary Conservation'' for [[4cpa]], the chain toggle buttons are listed A, C, B, D. However, the actual chains in this PDB file are A, B, I, J. Similarly, the buttons are A, B for [[1apm]] where the actual chains are E and I. Also [[1acb]] where the chains are E and I (not A and B). [[User:Eric Martz|Eric Martz]] 03:18, 2 January 2010 (IST) :This is a related problem to the latest PDB file remediation. Solved for these structures but there might be others | <span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Wrong chains''': When you ''show Evolutionary Conservation'' for [[4cpa]], the chain toggle buttons are listed A, C, B, D. However, the actual chains in this PDB file are A, B, I, J. Similarly, the buttons are A, B for [[1apm]] where the actual chains are E and I. Also [[1acb]] where the chains are E and I (not A and B). [[User:Eric Martz|Eric Martz]] 03:18, 2 January 2010 (IST) '''''Solved''''' by [[User:Jaime Prilusky|Jaime Prilusky]] 08:27, 3 January 2010 (IST) This is a related problem to the latest PDB file remediation. Solved for these structures but there might be others | ||
'''[[Help: Searching]]''' needs to be revised to agree with the actual search behavior (which needs careful testing) and to explain the limitations and advantages (with examples) of the WikiMedia Search (as modified) vs. the Google search. [[User:Eric Martz|Eric Martz]] 19:20, 13 April 2008 (IDT) | '''[[Help: Searching]]''' needs to be revised to agree with the actual search behavior (which needs careful testing) and to explain the limitations and advantages (with examples) of the WikiMedia Search (as modified) vs. the Google search. [[User:Eric Martz|Eric Martz]] 19:20, 13 April 2008 (IDT) | ||
