Group:SMART:2010 Pingry SMART Team Models: Difference between revisions

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Three residues (ARG-R, SER-S, ASN-N; residue numbers differ by structure) that bind cofactor:
Three residues (ARG-R, SER-S, ASN-N; residue numbers differ by structure) that bind cofactor:


CPK the sidechain, color backbone (dark blue) [128,128,255]
Display sidechains and color CPK


== AdhD K249G/H255R double mutant and Self-assembly into hydrogels ==
== AdhD K249G/H255R double mutant and Self-assembly into hydrogels ==
<applet load='AdhD_with_three_cofactors_no_H.pdb' size='400' frame='true' align='right' caption='AdhD K249G/H255R double mutant' scene='2010_Pingry_SMART_Team/Adhd_0/2'/>
<applet load='AdhD_with_three_cofactors_no_H.pdb' size='400' frame='true' align='right' caption='AdhD K249G/H255R double mutant' scene='2010_Pingry_SMART_Team/Adhd_0/2'/>
(β/α)<sub>8</sub> secondary structure features colored blue and red.


'''Design script:'''
'''Design script:'''


Select all
Select all  
 
Backbone off
 
Wireframe off
 
Spacefill off


Backbone off
Cartoon off  


Wireframe off
Backbone 300


Spacefill off
Color white


Cartoon off
Select (253-260) or (230-241) or (190-198) or (157-165) or (131-144) or (98-112) or (68-78) or (40-53)


Backbone 300
Color [128,128,192]


Color white
Select (118-122) or (149-153) or (174-177) or (201-205) or (244-249) or (22-25) or (57-61) or (86-91)


Select (253-260) or (230-241) or (190-198) or (157-165) or (131-144) or (98-112) or (68-78) or (40-53)
Color [255,128,128]


Color [128,255,255]
Select 249 and (sidechain or alpha)


Select (118-122) or (149-153) or (174-177) or (201-205) or (244-249) or (22-25) or (57-61) or (86-91)
Wireframe 250


Color [255,128,128]
Select 249 and sidechain


Select 249 and (sidechain or alpha)
Color cpk


Wireframe 250
Select 249 and alpha
 
Color [0,0,255]
 
Select 255 and (sidechain or alpha)
 
Wireframe 250  


Select 249 and sidechain
Select 255 and sidechain  


Color cpk
Color cpk  


Select 249 and alpha
Select 255 and alpha  


Color [0,0,255]
Color [0,0,255]  


Select 255 and (sidechain or alpha)
Select (251 or 252) and (sidechain or alpha)


Wireframe 250
Wireframe 250


Select 255 and sidechain
Select (251 or 252) and (sidechain)


Color cpk
Color cpk
Select 255 and alpha
Color [0,0,255]


{{Clear}}
{{Clear}}
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