Ferredoxin: Difference between revisions
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<applet load="1ea5_rot.pdb" size="300" color="white" frame="true" spin="on" caption="AChE" align="right" script="Acetylcholinesterase/New_down_gorge/1" /> | <applet load="1ea5_rot.pdb" size="300" color="white" frame="true" spin="on" caption="AChE" align="right" script="Acetylcholinesterase/New_down_gorge/1" /> | ||
'''3D structure of acetylcholinesterase'''<br /> | '''3D structure of acetylcholinesterase'''<br /> | ||
Ferredoxin (Fd) is found in chloroplasts which mediates electron transfer and contains an iron-sulfur cluster. It is involved in the photosynthesis process where its iron atoms accept or discharge electrons when they are being oxidized or reduced. The iron-sulfur cluster can contain 2Fe-2S and is termed plant-like or 3Fe-4S or 4Fe-4S clusters. | Ferredoxin (Fd) is found in chloroplasts which mediates electron transfer and contains an iron-sulfur cluster. It is involved in the photosynthesis process where its iron atoms accept or discharge electrons when they are being oxidized or reduced. The iron-sulfur cluster can contain 2Fe-2S and is termed plant-like or 3Fe-4S or 4Fe-4S clusters. | ||
Adrenodoxin (ADR) is a ferredoxin containing a 2Fe-2S group involved in electron transfer from NADPH+ to a cytochrome P-450 in the adrenal gland. Putidaredoxin (PUT) and terpredoxin (TER) are involved in the same reaction in bacteria and contain a 2Fe-2S group. | Adrenodoxin (ADR) is a ferredoxin containing a 2Fe-2S group involved in electron transfer from NADPH+ to a cytochrome P-450 in the adrenal gland. Putidaredoxin (PUT) and terpredoxin (TER) are involved in the same reaction in bacteria and contain a 2Fe-2S group. | ||
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[[3hui]] – Fd – Rhodopseudomonas palustris <br /> | [[3hui]] – Fd – Rhodopseudomonas palustris <br /> | ||
2kaj, 1dox, 1doy – SyFd +Ga – Synechocystis – NMR <br /> | [[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – Synechocystis – NMR <br /> | ||
1off – SyFd <br /> | [[1off]] – SyFd <br /> | ||
3gce – Fd – Nocardioides aromaticivorans <br /> | [[3gce]] – Fd – Nocardioides aromaticivorans <br /> | ||
2e4p, 2e4q - Fd – Pseudomonas sp. <br /> | [[2e4p, [[2e4q - Fd – Pseudomonas sp. <br /> | ||
2q3w, 1vm9 - PmFd (mutant) – Pseudomonas mendocina <br /> | [[2q3w, [[1vm9 - PmFd (mutant) – Pseudomonas mendocina <br /> | ||
2i7f - Fd – Rhodobacter capsulatus <br /> | [[2i7f - Fd – Rhodobacter capsulatus <br /> | ||
1rfk - Fd – Cyanobacterium masticogladus laminosus <br /> | [[1rfk - Fd – Cyanobacterium masticogladus laminosus <br /> | ||
1vck - Fd – Pseudomonas resinovorans <br /> | [[1vck - Fd – Pseudomonas resinovorans <br /> | ||
1wri, 1frr - Fd – Equisetum arvense <br /> | [[1wri, [[1frr - Fd – Equisetum arvense <br /> | ||
1sjg - PmFd– NMR <br /> | [[1sjg - PmFd– NMR <br /> | ||
1iue - Fd– Plasmodium falciparum <br /> | [[1iue - Fd– Plasmodium falciparum <br /> | ||
1m2a –AeFd – Aquifex aeolicus <br /> | [[1m2a –AeFd – Aquifex aeolicus <br /> | ||
1m2b, 1m2d, 1f37, 1f5b, 1f5c – AeFd (mutant) <br /> | [[1m2b, 1m2d, 1f37, 1f5b, 1f5c – AeFd (mutant) <br /> | ||
1l5p – Fd – Trichomonas vaginalis <br /> | [[1l5p – Fd – Trichomonas vaginalis <br /> | ||
1i7h - Fd – Escherichia coli <br /> | [[1i7h - Fd – Escherichia coli <br /> | ||
1czp, 1qt9, 1frd, 1fxa - aFd– anabaena <br /> | [[1czp, [[1qt9, [[1frd, [[1fxa - aFd– anabaena <br /> | ||
1j7a, 1j7b, 1j7c , 1qoa, 1qob, 1qof, 1qog- aFd (mutant) <br /> | [[1j7a, [[1j7b, [[1j7c , [[1qoa, [[1qob, [[1qof, [[1qog- aFd (mutant) <br /> | ||
1e0z – Fd – Halobacterium salinarium <br /> | [[1e0z – Fd – Halobacterium salinarium <br /> | ||
1pfd – Fd – Petroselinum crispum – NMR <br /> | [[1pfd – Fd – Petroselinum crispum – NMR <br /> | ||
1a70 - Fd (mutant) – Spinacia oleracea <br /> | [[1a70 - Fd (mutant) – Spinacia oleracea <br /> | ||
1awd - Fd – Chlorella fusca <br /> | [[1awd - Fd – Chlorella fusca <br /> | ||
2cjn, 2cjo, 1roe – SyFd – NMR <br /> | [[2cjn, [[2cjo, [[1roe – SyFd – NMR <br /> | ||
1rof – SyFd – Synechococcus elongates <br /> | [[1rof – SyFd – Synechococcus elongates <br /> | ||
1doi - Fd – Haloarcula marismortui <br /> | [[1doi - Fd – Haloarcula marismortui <br /> | ||
4fxc – Fd – Spirulina platensis <br /> | [[4fxc – Fd – Spirulina platensis <br /> | ||
1fxi – Fd – Aphanothece sacrum <br /> | [[1fxi – Fd – Aphanothece sacrum <br /> | ||
3dqy, 2qpz - Fd – Pseudomonas putida <br /> | [[3dqy, [[2qpz - Fd – Pseudomonas putida <br /> | ||
===4Fe-4S containing ferredoxins === | ===4Fe-4S containing ferredoxins === | ||
3eun – AvFd – Allochromatium vinosum <br /> | [[3eun – AvFd – Allochromatium vinosum <br /> | ||
3exy - AvFd (mutant) <br /> | [[3exy - AvFd (mutant) <br /> | ||
2vkr - Fd+Zn – Acidianus ambivalens <br /> | [[2vkr - Fd+Zn – Acidianus ambivalens <br /> | ||
2z8q - PfFd (mutant) – Pyrococcus furiosus <br /> | [[2z8q - PfFd (mutant) – Pyrococcus furiosus <br /> | ||
2fgo - Fd– Pseudomonas aeruginosa <br /> | [[2fgo - Fd– Pseudomonas aeruginosa <br /> | ||
1iqz, 1ir0 - BtFd – Bacillus thermoproteolyticus <br /> | [[1iqz, [[1ir0 - BtFd – Bacillus thermoproteolyticus <br /> | ||
1rgv - Fd – Thauera aromatica <br /> | [[1rgv - Fd – Thauera aromatica <br /> | ||
1dax, 1dfd – DaFd – Desulfovibrio africanus – NMR <br /> | [[1dax, [[1dfd – DaFd – Desulfovibrio africanus – NMR <br /> | ||
1fxr - DaFd <br /> | [[1fxr - DaFd <br /> | ||
1vjw – Fd – Thermotoga maritima <br /> | [[1vjw – Fd – Thermotoga maritima <br /> | ||
===3Fe-4S containing ferredoxins=== | ===3Fe-4S containing ferredoxins=== | ||
2v2k – Fd – Mycobacterium smegmatis <br /> | [[2v2k – Fd – Mycobacterium smegmatis <br /> | ||
1wtf - BtFd (mutant) <br /> | [[1wtf - BtFd (mutant) <br /> | ||
1sj1 - PfFd <br /> | [[1sj1 - PfFd <br /> | ||
1fxd - DgFd – Desulfovibrio gigas <br /> | [[1fxd - DgFd – Desulfovibrio gigas <br /> | ||
1f2g – DgFd – NMR <br /> | [[1f2g – DgFd – NMR <br /> | ||
1xer - Fd – Sulfolobus tokodaii <br /> | [[1xer - Fd – Sulfolobus tokodaii <br /> | ||
===4Fe-4S+3Fe-4S containing ferredoxins=== | ===4Fe-4S+3Fe-4S containing ferredoxins=== | ||
1gao, 6fdr, 7fd1, 7fdr, 1axq, 6fd1, 1frh, 1fri, 1frj, 1frk, 1frl, 1frm, 1fda, 1fdb, 1fdd, 5fd1, 1fer – AvFd – Azotobacter vinelandii <br /> | [[1gao, [[6fdr, [[7fd1, [[7fdr, [[1axq, [[6fd1, [[1frh, [[1fri,[[[1frj, [[1frk, [[1frl, [[1frm, [[1fda, [[1fdb, [[1fdd, [[5fd1, [[1fer – AvFd – Azotobacter vinelandii <br /> | ||
1pc4, 1pc5, 1g6b, 1g3o, 1ff2, 1b0v, 1d3w, 1b0t, 1a6l, 1ftc, 1frx, 2fd2, 1fd2 - AvFd (mutant) <br /> | [[1pc4, [[1pc5, [[1g6b, [[1g3o, [[1ff2, [[1b0v, [[1d3w, [[1b0t, [[1a6l, [[1ftc, [[1frx, [[2fd2, [[1fd2 - AvFd (mutant) <br /> | ||
1h98 – Fd – Thermus thermophilus <br /> | [[1h98 – Fd – Thermus thermophilus <br /> | ||
1a8p, 1bd6 - BsFd – Bacillus schlegelii – NMR <br /> | [[1a8p, [[1bd6 - BsFd – Bacillus schlegelii – NMR <br /> | ||
===4Fe-4S+4Fe-4S containing ferredoxins=== | ===4Fe-4S+4Fe-4S containing ferredoxins=== | ||
1dur – Fd – Peptoniphilus asaccarolyticus <br /> | [[1dur – Fd – Peptoniphilus asaccarolyticus <br /> | ||
1bwe, 1bqx - BsFd (mutant) – NMR <br /> | [[1bwe, [[1bqx - BsFd (mutant) – NMR <br /> | ||
2fdn, 1fca , 1fdn- Fd – Clostridium acidi-urici <br /> | [[2fdn, [[1fca , [[1fdn- Fd – Clostridium acidi-urici <br /> | ||
1blu - Fd – Chromatium vinosum <br /> | [[1blu - Fd – Chromatium vinosum <br /> | ||
1clf – Fd – Clostridium pasteurianum – NMR <br /> | [[1clf – Fd – Clostridium pasteurianum – NMR <br /> | ||
===Adrenoredoxin=== | ===Adrenoredoxin=== | ||
[[jqr – ADR Fd domain (mutant)+cytochrome c (mutant) – yeast – NMR <br /> | |||
2bt6 – cADR1 modified – cow <br /> | [[2bt6 – cADR1 modified – cow <br /> | ||
1l6u, 1l6v – cADR1 – NMR <br /> | [[1l6u, [[1l6v – cADR1 – NMR <br /> | ||
1e6e – cADR (mutant)+ADR reductase <br /> | [[1e6e – cADR (mutant)+ADR reductase <br /> | ||
1cje, 1ayf - cADR <br /> | [[1cje, [[1ayf - cADR <br /> | ||
===Putidaredoxin=== | ===Putidaredoxin=== | ||
1yji, 1yjj, 1pdx – PpPUT – Pseudomonas putida – NMR <br /> | [[1yji, [[1yjj, [[1pdx – PpPUT – Pseudomonas putida – NMR <br /> | ||
3lb8 – PpPUT (mutant)+PUT reductase <br /> | [[3lb8 – PpPUT (mutant)+PUT reductase <br /> | ||
1xln, 1xlo, 1xlp, 1xlq, 1r7s, 1oqq, 1oqr - PpPUT (mutant) <br /> | [[1xln, [[1xlo, [[1xlp, [[1xlq, [[1r7s, [[1oqq, [[1oqr - PpPUT (mutant) <br /> | ||
1gpx, 1put- PpPUT (mutant) - NMR <br /> | [[1gpx, [[1put- PpPUT (mutant) - NMR <br /> | ||
===Terpredoxin=== | ===Terpredoxin=== | ||
1b9r – TER – Pseudomonas - NMR <br /> | [[1b9r – TER – Pseudomonas - NMR <br /> | ||
