Lipase: Difference between revisions

Line 25:

===Bacterial natives: ===

[[3guu]], [[1lbs]], [[1lbt]], [[1tca]], [[1tcb]], [[1tcc]] – CaLipA – Candida antarctica

[[3guu]], [[1lbs]], [[1lbt]], [[1tca]], [[1tcb]], [[1tcc]] – CaLipA – ''Candida antarctica''

[[2veo]] – CaLipA – closed state

[[3icv]] – CaLipB (mutant)

[[1gz7]], [[1lpm]], [[1lps]]– CrLip 2 – Candida rugosa - closed state

[[1gz7]], [[1lpm]], [[1lps]]– CrLip 2 – ''Candida rugosa'' - closed state

[[1crl]], [[1trh]] – CrLip – open state

[[3g7n]] – Lip - Penicillium expansum

[[3g7n]] – Lip - ''Penicillium expansum''

[[1tia]] - Lip – Penicillium camemberti

[[1tia]] - Lip – ''Penicillium camemberti''

[[2qua]], [[2qub]] – LipA – Serratia marcescens

[[2qua]], [[2qub]] – LipA – ''Serratia marcescens''

[[2hih]] – Lip – Staphylococcus hyicus

[[2hih]] – Lip – ''Staphylococcus hyicus''

[[2fx5]] – Lip – Pseudomonas mendocina

[[2fx5]] – Lip – ''Pseudomonas mendocina''

[[1yzf]] – Lip – Enterococcus faecalis

[[1yzf]] – Lip – ''Enterococcus faecalis''

[[1dt3]], [[1dt5]], [[1dte]], [[1du4]], [[1ein]], [[1tib]] – TlLip - Thermomyces lanuginose

[[1dt3]], [[1dt5]], [[1dte]], [[1du4]], [[1ein]], [[1tib]] – TlLip - ''Thermomyces lanuginose''

[[1jfr]] – Lip – Streptomyces exfoliates

[[1jfr]] – Lip – ''Streptomyces exfoliates''

[[1oil]] – BcLip - Burkholderia cepacia

[[1oil]] – BcLip - ''Burkholderia cepacia''

[[2lip]] – BcLip – open state

[[1cvl]] – Lip – Chromobacterium viscosum

[[1cvl]] – Lip – ''Chromobacterium viscosum''

[[1lgy]] – Lip II – Rhizopus niveus

[[1lgy]] – Lip II – ''Rhizopus niveus''

[[1tic]] - Lip – Rhizopus oryzae

[[1tic]] - Lip – ''Rhizopus oryzae''

[[1thg]] – Lip – Geotrichum candidum

[[1thg]] – Lip – ''Geotrichum candidum''

[[3tgl]], [[4tgl]], [[1tgl]] – RmLip– Rhyzomucor miehei

[[3tgl]], [[4tgl]], [[1tgl]] – RmLip– ''Rhyzomucor miehei''

[[2zvd]] – PsLip - Pseudomonas sp. – open state

[[2zvd]] – PsLip - ''Pseudomonas sp.'' – open state

[[2z8x]] - PsLip – extracellular

[[2zj6]], [[2zj7]] – PsLip (mutant)

[[2z8z]] – PsLip(mutant) – closed state

[[3lip]] - Lip - Pseudomonas cepacia – open state

[[3lip]] - Lip - ''Pseudomonas cepacia'' – open state

[[1qge]], [[1tah]] – Lip – Pseudomonas glumae

[[1qge]], [[1tah]] – Lip – ''Pseudomonas glumae''

[[2w22]] – Lip – Geobacillus thermocatenulatus

[[2w22]] – Lip – ''Geobacillus thermocatenulatus''

[[1ji3]], [[1ku0]] – Lip – Bacillus stearothermophilus

[[1ji3]], [[1ku0]] – Lip – ''Bacillus stearothermophilus''

[[1ah7]] - Lip – Bacillus cereus

[[1ah7]] - Lip – ''Bacillus cereus''

[[2qxt]], [[2qxu]], [[1isp]], [[1i6w]] - BsLip – Bacillus subtilis

[[2qxt]], [[2qxu]], [[1isp]], [[1i6w]] - BsLip – ''Bacillus subtilis''

[[3d2a]], [[3d2b]], [[3d2c]], [[1t2n]], [[1t4m]] - BsLip (mutant)

[[2ory]] – Lip – Photobacterium lypoliticum

[[2ory]] – Lip – ''Photobacterium lypoliticum''

[[2z5g]], [[2dsn]] – Lip T1 – Geobacillus zalihae

[[2z5g]], [[2dsn]] – Lip T1 – ''Geobacillus zalihae''

Line 69:

[[3k6k]] – EstE7(HSL) – metagenome library

[[3fak]], [[3dnm]] – EstE5(HSL) – metagenome library

[[1evq]] – AaEst2(HSL) – Alicyclobacillus acidocaldarius

[[1evq]] – AaEst2(HSL) – ''Alicyclobacillus acidocaldarius''

[[1u4n]] – AaEst2(HSL) (mutant)

===Putative lipases; Proteins with unknown function but structural similarity to lipase obtained in structural genomics projects. ===

[[2rau]] - Lip – Sulfolobus solfataricus

[[2rau]] - Lip – ''Sulfolobus solfataricus''

[[3bxp]], [[3d3n]] - Lip – Lactobacillus plantarum

[[3bxp]], [[3d3n]] - Lip – ''Lactobacillus plantarum''

[[3e0x]] - Lip – Clostridium acetobutylicum

[[3e0x]] - Lip – ''Clostridium acetobutylicum''

[[1z8h]] – Lip – Nostoc sp. PCC 712

[[1z8h]] – Lip – ''Nostoc sp.'' PCC 712

[[1vj3]] - Lip – Nostoc sp.

[[1vj3]] - Lip – ''Nostoc sp.''

[[3bzw]] – Lip - Bacteroides thetaiotaomicron

[[3bzw]] – Lip - ''Bacteroides thetaiotaomicron''

===Lipase inhibitors===

Line 98:

[[1r50]] - BsLip+Sc-IPG-phosphonate

[[1k8q]] - Lip+phosphonate – dog

[[1ex9]] – Lip+Rc-(Rp,Sp)-1,2-dioctylcarbamoyl-glycero-3-O-phosphonate – Pseudomonas aeruginosa

[[1ex9]] – Lip+Rc-(Rp,Sp)-1,2-dioctylcarbamoyl-glycero-3-O-phosphonate – ''Pseudomonas aeruginosa''

[[5tgl]] – RmLip+N-hexyl-phosphonate

[[1lpb]] – Lip (pig)+colipase+C11 alkyl phosphonate

Line 116:

===Lipase with substrate bound at active site===

[[2zyh]] – AfLip (mutant)+fatty acid – Archaeoglobus fulgidus

[[2zyh]] – AfLip (mutant)+fatty acid – ''Archaeoglobus fulgidus''

[[2zyi]] - AfLip+fatty acid+Ca

[[2zyr]] - AfLip+fatty acid+Mg

Line 126:

[[1ys1]] – BhLip+hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester

[[1ys2]] – BhLip+hexylphosphonic acid (S) 2-methyl-3-phenylpropyl ester

[[1hqd]] – Lip+1-phenoxy-2-acrtoxy butane – Pseudomonas cepacia

[[1hqd]] – Lip+1-phenoxy-2-acrtoxy butane – ''Pseudomonas cepacia''

==References==

@@ Line 25: / Line 25: @@
 ===Bacterial natives: ===
-[[3guu]], [[1lbs]], [[1lbt]], [[1tca]], [[1tcb]], [[1tcc]] – CaLipA – Candida antarctica<br />
+[[3guu]], [[1lbs]], [[1lbt]], [[1tca]], [[1tcb]], [[1tcc]] – CaLipA – ''Candida antarctica''<br />
 [[2veo]] – CaLipA – closed state<br />
 [[3icv]] – CaLipB (mutant) <br />
-[[1gz7]], [[1lpm]], [[1lps]]– CrLip 2 – Candida  rugosa - closed state<br />
+[[1gz7]], [[1lpm]], [[1lps]]– CrLip 2 – ''Candida  rugosa'' - closed state<br />
 [[1crl]], [[1trh]] – CrLip – open state<br />
-[[3g7n]] – Lip - Penicillium expansum<br />
+[[3g7n]] – Lip - ''Penicillium expansum''<br />
-[[1tia]] - Lip – Penicillium camemberti<br />
+[[1tia]] - Lip – ''Penicillium camemberti''<br />
-[[2qua]], [[2qub]] – LipA – Serratia marcescens<br />
+[[2qua]], [[2qub]] – LipA – ''Serratia marcescens''<br />
-[[2hih]] – Lip – Staphylococcus hyicus<br />
+[[2hih]] – Lip – ''Staphylococcus hyicus''<br />
-[[2fx5]] – Lip – Pseudomonas mendocina<br />
+[[2fx5]] – Lip – ''Pseudomonas mendocina''<br />
-[[1yzf]] – Lip – Enterococcus faecalis<br />
+[[1yzf]] – Lip – ''Enterococcus faecalis''<br />
-[[1dt3]], [[1dt5]], [[1dte]], [[1du4]], [[1ein]], [[1tib]] – TlLip - Thermomyces lanuginose<br />
+[[1dt3]], [[1dt5]], [[1dte]], [[1du4]], [[1ein]], [[1tib]] – TlLip - ''Thermomyces lanuginose''<br />
-[[1jfr]] – Lip – Streptomyces exfoliates<br />
+[[1jfr]] – Lip – ''Streptomyces exfoliates''<br />
-[[1oil]] – BcLip - Burkholderia cepacia<br />
+[[1oil]] – BcLip - ''Burkholderia cepacia''<br />
 [[2lip]] – BcLip – open state<br />
-[[1cvl]] – Lip – Chromobacterium viscosum<br />
+[[1cvl]] – Lip – ''Chromobacterium viscosum''<br />
-[[1lgy]] – Lip II – Rhizopus niveus<br />
+[[1lgy]] – Lip II – ''Rhizopus niveus''<br />
-[[1tic]] - Lip  – Rhizopus oryzae<br />
+[[1tic]] - Lip  – ''Rhizopus oryzae''<br />
-[[1thg]] – Lip – Geotrichum candidum<br />
+[[1thg]] – Lip – ''Geotrichum candidum''<br />
-[[3tgl]], [[4tgl]], [[1tgl]] – RmLip– Rhyzomucor miehei<br />
+[[3tgl]], [[4tgl]], [[1tgl]] – RmLip– ''Rhyzomucor miehei''<br />
-[[2zvd]] – PsLip - Pseudomonas sp. – open state<br />
+[[2zvd]] – PsLip - ''Pseudomonas sp.'' – open state<br />
 [[2z8x]] - PsLip – extracellular<br />
 [[2zj6]], [[2zj7]] – PsLip (mutant) <br />
 [[2z8z]] – PsLip(mutant) – closed state<br />
-[[3lip]] - Lip - Pseudomonas cepacia – open state<br />
+[[3lip]] - Lip - ''Pseudomonas cepacia'' – open state<br />
-[[1qge]], [[1tah]] – Lip – Pseudomonas glumae<br />
+[[1qge]], [[1tah]] – Lip – ''Pseudomonas glumae''<br />
-[[2w22]] – Lip – Geobacillus thermocatenulatus<br />
+[[2w22]] – Lip – ''Geobacillus thermocatenulatus''<br />
-[[1ji3]], [[1ku0]] – Lip – Bacillus stearothermophilus<br />
+[[1ji3]], [[1ku0]] – Lip – ''Bacillus stearothermophilus''<br />
-[[1ah7]] - Lip – Bacillus cereus<br />
+[[1ah7]] - Lip – ''Bacillus cereus''<br />
-[[2qxt]], [[2qxu]], [[1isp]], [[1i6w]] - BsLip  – Bacillus subtilis<br />
+[[2qxt]], [[2qxu]], [[1isp]], [[1i6w]] - BsLip  – ''Bacillus subtilis''<br />
 [[3d2a]], [[3d2b]], [[3d2c]], [[1t2n]], [[1t4m]] - BsLip (mutant) <br />
-[[2ory]] – Lip – Photobacterium lypoliticum<br />
+[[2ory]] – Lip – ''Photobacterium lypoliticum''<br />
-[[2z5g]], [[2dsn]] – Lip T1 – Geobacillus zalihae<br />
+[[2z5g]], [[2dsn]] – Lip T1 – ''Geobacillus zalihae''<br />
@@ Line 69: / Line 69: @@
 [[3k6k]] – EstE7(HSL) – metagenome library<br />
 [[3fak]], [[3dnm]] – EstE5(HSL) – metagenome library<br />
-[[1evq]] – AaEst2(HSL) – Alicyclobacillus acidocaldarius<br />
+[[1evq]] – AaEst2(HSL) – ''Alicyclobacillus acidocaldarius''<br />
 [[1u4n]] – AaEst2(HSL) (mutant) <br />
 ===Putative lipases; Proteins with unknown function but structural similarity to lipase obtained in structural genomics projects. ===
-[[2rau]] - Lip – Sulfolobus solfataricus<br />
+[[2rau]] - Lip – ''Sulfolobus solfataricus''<br />
-[[3bxp]], [[3d3n]] - Lip – Lactobacillus plantarum<br />
+[[3bxp]], [[3d3n]] - Lip – ''Lactobacillus plantarum''<br />
-[[3e0x]] - Lip – Clostridium acetobutylicum<br />
+[[3e0x]] - Lip – ''Clostridium acetobutylicum''<br />
-[[1z8h]] – Lip – Nostoc sp. PCC 712<br />
+[[1z8h]] – Lip – ''Nostoc sp.'' PCC 712<br />
-[[1vj3]] - Lip  – Nostoc sp. <br />
+[[1vj3]] - Lip  – ''Nostoc sp.'' <br />
-[[3bzw]] – Lip - Bacteroides thetaiotaomicron<br />
+[[3bzw]] – Lip - ''Bacteroides thetaiotaomicron''<br />
 ===Lipase inhibitors===
@@ Line 98: / Line 98: @@
 [[1r50]] - BsLip+Sc-IPG-phosphonate <br />
 [[1k8q]] - Lip+phosphonate – dog <br />
-[[1ex9]] – Lip+Rc-(Rp,Sp)-1,2-dioctylcarbamoyl-glycero-3-O-phosphonate – Pseudomonas aeruginosa <br />
+[[1ex9]] – Lip+Rc-(Rp,Sp)-1,2-dioctylcarbamoyl-glycero-3-O-phosphonate – ''Pseudomonas aeruginosa'' <br />
 [[5tgl]] – RmLip+N-hexyl-phosphonate <br />
 [[1lpb]] – Lip (pig)+colipase+C11 alkyl phosphonate <br />
@@ Line 116: / Line 116: @@
 ===Lipase with substrate bound at active site===
-[[2zyh]] – AfLip (mutant)+fatty acid – Archaeoglobus fulgidus<br />
+[[2zyh]] – AfLip (mutant)+fatty acid – ''Archaeoglobus fulgidus''<br />
 [[2zyi]] - AfLip+fatty acid+Ca <br />
 [[2zyr]] - AfLip+fatty acid+Mg <br />
@@ Line 126: / Line 126: @@
 [[1ys1]] – BhLip+hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester <br />
 [[1ys2]] – BhLip+hexylphosphonic acid (S) 2-methyl-3-phenylpropyl ester<br />
-[[1hqd]] – Lip+1-phenoxy-2-acrtoxy butane – Pseudomonas cepacia <br />
+[[1hqd]] – Lip+1-phenoxy-2-acrtoxy butane – ''Pseudomonas cepacia'' <br />
 ==References==
 <references />

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