Structure superposition tools: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
||
| Line 174: | Line 174: | ||
*Z-score: 25.5. | *Z-score: 25.5. | ||
*The structure-based sequence alignment has many gaps. | *The structure-based sequence alignment has many gaps. | ||
====DeepView = Swiss-PDBViewer==== | |||
*Magic Fit -- SEQUENCED-BASED: | |||
**4.4 Å RMSD for 114 aligned residues. | |||
*Iterative Magic Fit -- Sequence based followed by RMSD minimization: | |||
**1.69 Å RMSD for 159 aligned residues. | |||
*Explore Domain Alternate Fits -- sequence-independent alignment: | |||
**Used option NOT to use selected residues. | |||
**Nevertheless program complained repeatedly that I had not selected residues. | |||
**Nevertheless program produced an alignment: | |||
**1.0 Å for 64 aligned residues. | |||
====FATCAT example==== | ====FATCAT example==== | ||
