Structure superposition tools: Difference between revisions
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===Example for Rigid Alignment=== | ===Example for Rigid Alignment=== | ||
[[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin found in [[1tub]] chain A, length 440. However, the sequence | [[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin found in [[1tub]] chain A, length 440. However, the sequence identity is very low (~12%). | ||
====CE example==== | ====CE example==== | ||
*3.2 Å RMSD for 305 residues. The structural alignment has 96 unaligned "gap" residues: one large gap of ~30 residues, and ten smaller gaps of 8 residues or less. | *3.2 Å RMSD for 305 residues. The structural alignment has 96 unaligned "gap" residues: one large gap of ~30 residues, and ten smaller gaps of 8 residues or less. | ||
