Structure superposition tools: Difference between revisions
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===Example for Rigid Alignment=== | ===Example for Rigid Alignment=== | ||
<table align="right" border="1" cellpadding="4"><tr><td> | |||
Tool</td><td>Residues Aligned</td><td>RMSD, Å | |||
</td></tr><tr><td> | |||
CE</td><td>305</td><td>3.2 | |||
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yyy | |||
</td></tr><tr><td> | |||
yyy | |||
</td></tr><tr><td> | |||
yyy | |||
</td></tr><tr><td> | |||
yyy | |||
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[[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | [[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | ||
====CE example==== | ====CE example==== | ||
