Structure superposition tools: Difference between revisions
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DeepView</td><td>159<br>64</td><td>1.69<br>1.0 | DeepView</td><td>159<br>64</td><td>1.69<br>1.0 | ||
</td></tr><tr><td> | </td></tr><tr><td> | ||
FATCAT</td><td>298</td><td>3.02 | |||
</td></tr><tr><td> | </td></tr><tr><td> | ||
MAMMOTH</td><td>298?</td><td>4.0? | |||
</td></tr><tr><td> | |||
PyMOL</td><td>197</td><td>4.5 | |||
</td></tr><tr><td> | |||
TM-align</td><td>312</td><td>3.4 | |||
</td></tr><tr><td> | |||
TopMatch</td><td>251</td><td>3.1 | |||
</td></tr><tr><td> | |||
VAST</td><td>299</td><td>4.0 | |||
</td></tr></table> | </td></tr></table> | ||
[[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | [[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | ||
