Structure superposition tools: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) |
||
| Line 264: | Line 264: | ||
====TopMatch example==== | ====TopMatch example==== | ||
*Error # 1063, no explanation. No structures displayed in Jmol. | *Error # 1063, no explanation. No structures displayed in Jmol. Result displayed nevertheless: | ||
*3.1 Å RMSD. Alignment includes 251 residues. | *3.1 Å RMSD. Alignment includes 251 residues. | ||
*12% sequence identity in the aligned regions. | |||
*Tried the example requiring flexibility (above) as a second case. A 40 residue subdomain was aligned with RMSD 1.8 Å, and the alignment was displayed in Jmol with no error. | *Tried the example requiring flexibility (above) as a second case. A 40 residue subdomain was aligned with RMSD 1.8 Å, and the alignment was displayed in Jmol with no error. | ||
