Structure superposition tools: Difference between revisions
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Dali</td><td></td><td></td><td> | Dali</td><td></td><td></td><td> | ||
</td></tr><tr><td> | </td></tr><tr><td> | ||
DeepView</td><td | DeepView</td><td>389</td><td>1.11</td><td>22/437 | ||
</td></tr><tr><td> | </td></tr><tr><td> | ||
FATCAT</td><td>424</td><td>1.75</td><td>16 | FATCAT</td><td>424</td><td>1.75</td><td>16 | ||
</td></tr><tr><td> | </td></tr><tr><td> | ||
PyMOL</td><td></td><td></td><td> | PyMOL</td><td>325</td><td>0.90</td><td> | ||
</td></tr></table> | </td></tr></table> | ||
[[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | [[1fsz]] is the bacterial cell division protein FtsZ, length 334 residues with coordinates (372 in crystallized protein). It has structural similarity to mammalian tubulin<ref>PMID: 9628483</ref><ref>PMID: 20459678</ref> found in [[1tub]] chain A, length 440. However, the sequence identity is low. 92/372 residues can be aligned with 19% identity (2 gaps), and another 14 residue stretch with 42% identity (no gaps). | ||
