Sandbox 30: Difference between revisions
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<applet load='1QLQ' size='450' frame='true' align='right' caption='Click on the links to the left to view different structural aspects' /> | <applet load='1QLQ' size='450' frame='true' align='right' caption='Click on the links to the left to view different structural aspects' /> | ||
==Overview and Function== | ==Overview and Function== | ||
An easy way to distinguish between main structural component of the protein is to view it using <scene name='Sandbox_30/Trypsin_cartoon_rainbow/2'>rainbow coloration.</scene> To see various other specific structures of Trypsin, click on their links. | An easy way to distinguish between main structural component of the protein is to view it using <scene name='Sandbox_30/Trypsin_cartoon_rainbow/2'>rainbow coloration.</scene> To see various other specific structures of Trypsin, click on their links. | ||
* <scene name='Sandbox_30/Trypsin_cartoon_rainbow/2'> | * <scene name='Sandbox_30/Trypsin_cartoon_rainbow/2'>Rainbow Coloration</scene> | ||
* <scene name='Sandbox_30/Skeletal_structure/1'>Skeletal Structure</scene> | * <scene name='Sandbox_30/Skeletal_structure/1'>Skeletal Structure</scene> | ||
* <scene name='Sandbox_30/Helixs_maroon/2'>α Helices</scene> | * <scene name='Sandbox_30/Helixs_maroon/2'>α Helices</scene> | ||
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* <scene name='Sandbox_30/Side_chains/1'>Side Chains (orange)</scene> | * <scene name='Sandbox_30/Side_chains/1'>Side Chains (orange)</scene> | ||
* <scene name='Sandbox_30/Polar_and_nonpolar/1'>Polar (blue), and Nonpolar (Crimson)</scene> | * <scene name='Sandbox_30/Polar_and_nonpolar/1'>Polar (blue), and Nonpolar (Crimson)</scene> | ||
* <scene name='Sandbox_30/Ball_and_stick_with_water/1'>Water | * <scene name='Sandbox_30/Ball_and_stick_with_water/1'>Water (blue) around Trypsin (orange)</scene> | ||
* <scene name='Sandbox_30/Hydrophobic_red/1'>Hydrophobic Portion of | * <scene name='Sandbox_30/Hydrophobic_red/1'>Hydrophobic Portion of Trypsin (red)</scene> | ||
* <scene name='Sandbox_30/Surface/1'>Surface</scene> | |||
==Structure== | ==Structure== | ||
Trypsin's amino | Trypsin's primary amino acid sequence forms two <scene name='Sandbox_30/Helixs_maroon/2'>α helices</scene> and two <scene name='Sandbox_30/Sheets_green/3'>β sheets</scene>. Both of the α helices are right handed and the β sheets are anti-parallel. The order of the secondary structures is easily visible when using the <scene name='Sandbox_30/Trypsin_cartoon_rainbow/2'>rainbow coloration</scene> scheme to identify secondary structures. The N-terminus (blue) is the beginning of trypsin and the C-terminus (agua-green) is the end. | ||
===Polar and Nonpolar Residues=== | ===Polar and Nonpolar Residues=== | ||
Revision as of 00:15, 11 October 2010
Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.
Trypsin
Overview and FunctionAn easy way to distinguish between main structural component of the protein is to view it using rainbow coloration. To see various other specific structures of Trypsin, click on their links.
StructureTrypsin's primary amino acid sequence forms two α helices and two β sheets. Both of the α helices are right handed and the β sheets are anti-parallel. The order of the secondary structures is easily visible when using the rainbow coloration scheme to identify secondary structures. The N-terminus (blue) is the beginning of trypsin and the C-terminus (agua-green) is the end.
Polar and Nonpolar ResiduesLigand Interactions
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