User:Wayne Decatur/Biochem642 Molecular Visualization 2010 Fall Sessions: Difference between revisions
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*Pymol to Jmol conversion built into [[Scene authoring tools|Proteopedia's Scene Authoring Tools]] | *Pymol to Jmol conversion built into [[Scene authoring tools|Proteopedia's Scene Authoring Tools]] | ||
*Item V on [http://www.umass.edu/microbio/chime/top5.htm MolviZ "Top 5"] - [http://polyview.cchmc.org/polyview3d.html Polyview-3D] = fancy [http://pymol.org/ PyMol] views and animations made super easy via a web server with forms. | *Item V on [http://www.umass.edu/microbio/chime/top5.htm MolviZ "Top 5"] - [http://polyview.cchmc.org/polyview3d.html Polyview-3D] = fancy [http://pymol.org/ PyMol] views and animations made super easy via a web server with forms. | ||
*[[Morphs|Morphing]] | *[[Morphs|Morphing]] allows displaying the visual transition between two molecular conformations. | ||
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*[http://chemapps.stolaf.edu/pe/protexpl/ Jmol Protein Explorer's] powerful Quickviews approach really helps quickly generate particular scenes or ideas for scenes to generate elsewhere. Using the information detailed [[Help:Copying FirstGlance Scenes into Proteopedia|here]] or at [http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/jtatdocs.htm#fgijscripting the JTAT site on extracting state scripts], it is possible to go from these views to Proteopedia scenes; however, as the version of Jmol differs there may be discrepancies and issues. | *[http://chemapps.stolaf.edu/pe/protexpl/ Jmol Protein Explorer's] powerful Quickviews approach really helps quickly generate particular scenes or ideas for scenes to generate elsewhere. Using the information detailed [[Help:Copying FirstGlance Scenes into Proteopedia|here]] or at [http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/jtatdocs.htm#fgijscripting the JTAT site on extracting state scripts], it is possible to go from these views to Proteopedia scenes; however, as the version of Jmol differs there may be discrepancies and issues. | ||
*[http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/index.htm Jmol Tutorial-Authoring Template (JTAT)] describes and works for developing and viewing scenes offline or developing and viewing privately. | *[http://www.bioinformatics.org/jmol-tutorials/jtat/_docs/index.htm Jmol Tutorial-Authoring Template (JTAT)] describes and works for developing and viewing scenes offline or developing and viewing privately. | ||
*[[Morphs|Morphing]] | *[[Morphs|Morphing]] allows displaying the visual transition between two molecular conformations. | ||
*[http://polyview.cchmc.org/polyview3d.html Polyview-3D], fancy [http://pymol.org/ PyMol] views and animations made super easy via a web server with forms. | *[http://polyview.cchmc.org/polyview3d.html Polyview-3D], fancy [http://pymol.org/ PyMol] views and animations made super easy via a web server with forms. | ||
*[http://www.weizmann.ac.il/ISPC/eMovie.html eMovie],a [http://pymol.org/ PyMol] plug-in for macromolecular movie-making. | *[http://www.weizmann.ac.il/ISPC/eMovie.html eMovie],a [http://pymol.org/ PyMol] plug-in for macromolecular movie-making. | ||
