User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods: Difference between revisions
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* I removed references to model numbers from 1cts and 2cts. | * I removed references to model numbers from 1cts and 2cts. | ||
* Then using the second set of chain A in each PDB file, I changed the chain identifier to B for that part using part of the file in [http://dicsoft2.physics.iisc.ernet.in/pdbgoodies/ PDB Goodies]. It didn't matter that PDB Goodies ignored and left out the heteroatoms because the Morph Server does too. | * Then using the second set of chain A in each PDB file, I changed the chain identifier to B for that part using part of the file in [http://dicsoft2.physics.iisc.ernet.in/pdbgoodies/ PDB Goodies]. It didn't matter that PDB Goodies ignored and left out the heteroatoms because the Morph Server does too. | ||
* Then I each of those two produced files subsequently to the Yale Morph Server [http://molmovdb.mbb.yale.edu/cgi-bin/beta.cgi Beta Server] and got the result quickly. | |||
* I downloaded the produced multi-model file by clicking on the Jmol icon in the corner and selecting view movie.pdb.gz from the menu and unzipped the file. | |||
* I renumbered the models from 0 through 11 to 1 to 12 so they'd work with Jmol. | |||
* I added back the citrate and Acetyl-COA to | |||
